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Chapter 7  Signaling Transduction and Metabolomics  71


            which  results  in  the  phosphorylation  of  other  cytokine  receptors   present at the plasma membrane of antigen-presenting cells and binds
            as  well  as  other  substrate  proteins.  Among  these  substrates,  the   to the integrin receptor LFA-1 to promote cell–cell adhesion.
            signal  transducer  and  activator  of  transcription  (STAT)  family  of   Ligand binding to the extracellular domain induces clustering of
            transcription factors are pivotal to JAK-mediated cytokine signaling.   integrins, allowing separation of the different subunits cytoplasmic
            STATs are phosphorylated on Tyr residues by JAKs upon cytokine   portions  forming  interactions  with  cytoskeleton  proteins  involved
            binding to the receptor. Phospho-STATs homo- or hetero-dimerize,   in actin polymerization (outside-in signaling). Signals arising from
            and translocate to the nucleus to activate gene expression. STATs are   the  cellular  interior,  including  phosphorylation,  can  also  separate
            also phosphorylated on a serine residue via MAPK, which serves to   these cytoplasmic domains and can affect ligand binding (inside-out).
            strengthen the intensity of the signal. As part of the cytokine signaling   Ligand binding to integrin receptors also signals to protein tyrosine
            attenuation, STATs induce genes encoding for suppressors of cytokine   kinases such as the SFKs and focal adhesion kinase (Fak). This part
            signaling proteins (SOCS), which bind to phospho-tyrosine residues   of the signaling is not completely understood, but appears to involve
            of the cytokine receptor and JAK through SH2-binding domains.  a  domain  in  the  β-integrin  tail  (NPXY  motif)  that  binds  talin,
              JAK inhibitors, based on their ability to block cytokine signaling,   which in turn recruits paxillin that binds Fak, which, once activated,
            are used in allergic and rheumatoid arthritis disease therapy.  phosphorylates SFKs to mediate integrin response.

            Multichain Immune Recognition Receptors               Tumor Necrosis Factor Receptors and Signaling

            This  family  of  receptors  include  antigen  receptors  in  B  and  T   Tumor  necrosis  factor  receptors  (TNFRs)  influence  inflammation,
            lymphocytes,  activating  receptors  in  natural  killer  (NK)  cells,  and   innate immunity, lymphoid organization and T-cell responses. There
            immunoglobulin  E  (IgE)  and  Fc  receptors. This  class  of  receptors   are approximately 19 different ligands for TNFR that mediate cellular
            contains different integral membrane subunits that bind the ligand   responses through 29 TNFRs. TNFRs are a family of single-membrane-
            at the cell surface and transduce the signal. Ligand binding induces   spanning proteins that contain an extracellular TNF-binding region
            oligomerization of receptor subunits that contain immunoreceptor   and a cytoplasmic tail. As in the case of other cytokine receptors,
            tyrosine-based  activation  motifs  (ITAMs)  within  their  cytoplasmic   ligand binding causes oligomerization and the formation of a mature
            domains. These  domains  become  phosphorylated  on  tyrosine  resi-  receptor  complex  that  is  required  to  transduce  the  signal. TNFRs
            dues upon receptor activation. These phosphotyrosines are involved   fall into three classes: (1) death domain (DD) containing receptors
            in activation of a series of protein tyrosine kinases containing SH2   (fatty acid synthase, TNFR1, and DR3), which activate the caspase
            domains  that  include  Src  (Src  family  kinase  [SFK]),  Syk  (Syk  or   cascade via the DD-initiating extrinsic apoptotic pathway; (2) decoy
            ZAP-70),  and Tec  (Btk,  Itk,  Rlk),  which  mediate  immune  signal-  receptors, which lack a cytoplasmic tail and therefore cannot transmit
            ing  through  downstream  pathways  that  include  MAPK,  calcium   the signal, making these receptors ligand sequesters; and (3) TNFR-
            signaling,  and  NF-κB,  among  others.  In  Tec  kinases,  additional   associated factor (TRAF) receptors such as TNFR2, which lack the
            downstream  targets  include  enzymes  such  as  phospholipase  C  γ   DD-recruiting TRAF proteins. In general, TRAFs are associated with
            (PLCγ). The precise mechanism of this activation is not completely   either proapoptotic or survival pathways through activation of the
            understood,  and  in  some  cases,  such  as T-cell  receptors,  a  protein   NF-κB  family  of  transcription  factors  and  MAPK  signaling  (Erk,
            tyrosine phosphatase (-CD45, which counteracts the action of SFKs)   JNK, and p38). TRAFs activate NF-κB through ubiquitin-mediated
            is regulated upon ligand binding.                     degradation of their inhibitor IκBα, which retains NF-κB inactive in
              The activities of some of these receptors are the basis of immu-  the cytoplasm. This process is initiated by phosphorylation of IκBα
            notherapy  in  cancer.  For  example,  programmed  death-1  (PD-1)   by the IκBα kinase (IKK) complex, mainly by the IKK-β catalytic
            mediates  tumor-induced  immunosuppression.  Cancer  cells  express   subunit, and requires a regulatory subunit (also known as NEMO).
            the PD-1 ligand, which activates the PD-1 receptor present in tumor-  Upstream of IKKs are other kinases including NF-κB-inducing kinase
            infiltrated lymphocytes, suppressing the immune response. Blockade   (NIK), which binds to TRAFs. Nuclear-activated NF-κB modulates
            of PD-1 activation with monoclonal antibodies has been successful   gene expression, which mediates TNF biologic responses.
            in treating several human tumors such as melanoma. Mechanistically,
            T cells are activated through the T-cell receptor upon binding of major
            histocompatibility  complex  (MHC)  plus  peptides  on  an  antigen-  Toll-Like Receptors and Signaling
            presenting cell (APC; in this case in the tumor cell), and binding
            of APC CD80/86 to T cell CD28. Activation of the T-cell receptor   Toll-like receptors (TLR) play essential roles in the innate immune
            increases expression of PD-1 to suppress the immune/inflammatory   response. Ten TLRs have been identified and can be grouped into
            response. Cancer cells activate this pathway, upregulating the PD-1   two  classes  based  on  their  extracellular  domain:  (1)  TLRs  with
            ligand to promote survival and suppress the immune-mediated death   leucine-rich repeats; and (2) TLRs with immunoglobulin domains.
            of tumor cells.                                       The ligands for TLRs are diverse and include the different constituent
                                                                  components of the microorganism, such as lipopolysaccharides and
                                                                  heat shock proteins (which bind to TLR2 and TLR4). Host defense
            Integrin Signaling                                    against microorganisms mainly relies on signals originating from the
                                                                  TIR (Toll/IL-1) intracellular domain (a domain present in TLRs and
            Integrin receptors are involved in cell adhesion, migration, survival,   IL-1Rs). The TLR signaling pathway is similar to the one triggered
            and growth. This signaling is central in hematopoietic cell function,   by the IL-1R. Ligand binding induces TLR multimeric receptor com-
            for example, at places of inflammation or infection, where integrins   plexes, recruiting adaptor proteins such as MyD88, which contains
            trigger a cascade by which leukocytes exit the vasculature. Interestingly,   a TIR domain and a death domain, that in turn binds to the IL-1R-
            these receptors signal bidirectionally through the plasma membrane   associated kinase (IRAK). IRAK is activated by phosphorylation and
            in pathways referred to as inside-out and outside-in signaling. Integrins   then  associates  with  TRAF6,  leading  to  activation  of  mainly  two
            are a class of receptors that comprise heterodimeric type I transmem-  different pathways, JNK and NF-κB to activate the innate immune
            brane proteins consisting of α and β subunits. These subunits contain   response, including release of inflammatory cytokines.
            a large extracellular domain, a single transmembrane domain, and
            a short cytoplasmic tail. There are 18 α and 8 β subunits that are
            associated and form 24 different integrins with different affinities for   Wnt Signaling
            ligands. Most of the ligands are ECM proteins containing one of the
            two motifs: arginine–glycine–aspartate (RGD) or leucine–aspartate–  Wnt proteins are lipid-modified, secreted proteins of approximately
            valine (LDV). Examples of integrin ligands are ICAM-1, which is   400  amino  acids  that  bind  to  Wnt  cell  surface  transmembrane
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