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Chapter 60  Myelodysplastic Syndromes  951

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            role  in  hematologic  malignancy  has  been  best  characterized  by  its   tyrosine kinase mutations found in MDS,  but still only occur in
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            involvement in recurrent translocations, including t(3;12)(q26;p13)    about 5% of cases and as mentioned earlier, tend to begin as sub-
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            and deletions of 12p.  In MDS, however, both missense and inac-  clonal, proproliferative events that frequently drive the transition to
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            tivating  frameshift  point  mutations  have  been  described  as  well.   AML.  Best known for its role in MPNs, JAK2 is mutated in about
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            There is some data that the missense mutations, which mostly cluster   3%  to  5%  of  MDS,  particularly  RARS-T  and  CMML.   JAK2
            in the DNA-binding ETS domain, have a dominant negative effect   mutations in MDS tend not to be associated with overproduction of
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            on the wildtype allele.  However, whether malignant transformation   mature hematopoietic cells as they are in MPNs, likely as a conse-
            requires ETV6 activity below a critical threshold remains unclear, as   quence  of  concomitant  biologic  defects  contributing  to  ineffective
            not all frameshift mutations occur with loss of heterozygosity (and   hematopoiesis. 159
            some  frameshifts  can  confer  dominant  negative  function  as  well).
            ETV6 mutations are relatively rare events in MDS, occurring in at
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            most 5% of cases;  recently, familial cases of MDS and AML because   Cohesin Complex Genes
            of inherited ETV6 mutations have also been described. 39
                                                                  Genes encoding members of the cohesin complex family, including
                                                                  RAD21, STAG2, SMC3, and SMC1A, are each mutated in a small
            GATA2                                                 minority of MDS cases, but collectively, cohesin mutations can be
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                                                                  found  in  about  10%  of  MDS.  Their  physiologic  role  is  in  the
            GATA2 encodes a transcription factor with pleiotropic effects in early   maintenance  of  chromatid  structural  fidelity,  particularly  during
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            hematopoietic  progenitor  cells.   In  contrast  to  most  other  genes   mitosis. How cohesin complex mutations affect MDS pathogenesis
            described here, acquired mutations in GATA2 are quite rare, but there   is not completely understood, since they do not appear to directly
            are a number of clinical syndromes associated with germline GATA2   promote  chromosomal  instability.  Clinical  studies,  however,  have
            mutations, several of which involve a risk of developing MDS and   shown  that  they  appear  to  be  disproportionately  associated  with
            AML. These include Emberger syndrome (congenital lymphedema   multilineage dysplasia, and confer inferior survival and an increased
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            and  risk  of  AML),   autosomal  dominant  monocytopenia  and   risk of progression to AML. 161
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            mycobacterial infection syndrome,  and dendritic cell, monocyte, B
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            and natural killer (NK) lymphoid deficiency syndrome.  In addi-
            tion, GATA2 mutations have also been described in kindreds with no   Other Genes
            accessory phenotype beyond a strong history of early-onset MDS/
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            AML.  Several phenotypic components appear to be dependent on   The genes described previously collectively account for the majority
            the type of mutation. For instance, nearly all patients who develop   of mutations found recurrently in MDS, but this list is certainly not
            MDS or AML have mutations in or immediately 5′ to the second   exhaustive. Even very recent, broad surveys of patients with MDS
            zinc finger domain, which tend to be missense substitutions predicted   using the most updated panels of gene mutations and high-resolution
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            to  affect  DNA  binding.   On  the  other  hand,  a  second  group  of   FISH and karyotyping have shown that between 10% and 20% of
            patients  with  truncating  frameshift  mutations  in  the  N-terminal   patients lack a detectable genetic abnormality. 78–81  There are multiple
            region of the gene tend to present at younger ages with more pro-  possible  explanations  for  this  observation.  For  example,  some  of
            nounced immune deficits, but have a lower risk of MDS or AML.   these patients may have other types of aberrations not captured by
            Although the mechanism by which these patients develop MDS is   sequencing or karyotyping, such as small copy number abnormali-
            not  completely  clear,  the  subset  of  patients  with  GATA2  germline   ties that might be detected by SNP arrays, which are not routinely
            mutations who develop MDS or AML has been observed to acquire   performed in clinical practice. More likely, however, many of these
            ASXL1  mutations  with  frequency  much  greater  than  would  be   patients  probably  have  mutations  in  genes  that  are  less  frequently
            expected to occur by chance. 146                      altered in MDS pathogenesis. Some of these mutations are in path-
                                                                  ways  represented  by  other,  better-known  genes;  for  example,  rare
                                                                  mutations have been described in PTPN11, a tyrosine phosphatase
            TP53                                                  that  acts  as  a  downstream  effector  in  the  RAS  pathway,   and  in
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                                                                  BRAF,  better  known  for  its  association  with  melanoma  and  hairy
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            TP53 mutations occur in about 10% of patients with MDS, and as   cell  leukemia.   Similarly,  rare  mutations  have  been  described  in
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            in other settings imply a poor prognosis and response to therapy.    EED and SUZ12, other components of the PRC2 that affiliate with
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            They are closely associated with a complex karyotype and tend not   EZH2 and collectively interact with ASXL1.  Other times, MDS
            to  cooccur  with  other  recurrent  driver  mutations. 147,148   They  fre-  can occur in the setting of mutations in genes better known for being
            quently  cooccur  with  del(5q)  and  may  represent  a  progression   associated with other diseases, such mutations in CBL, a gene better
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            pathway for patients with 5q− syndrome.  They are also frequently   known  for  its  association  with  juvenile  myelomonocytic  leukemia
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            found in t-MDS and AML.  Recently, a small series of patients with   that encodes an E3 ubiquitin ligase responsible for degrading several
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            t-AML showed that TP53 mutations present in the leukemia were   tyrosine kinases.  Finally, mutations are occasionally described in
            detectable in samples collected 3–6 years earlier, which in at least two   relatively novel gene classes, including genes encoding the G-protein
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            patients predated their original chemotherapy.  This suggests that   subunits  GNAS   and  GNB1   and  the  DNA  repair  enzymes
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            the expansion of rare preexisting clones harboring TP53 mutations   hOGG1, XRCC3, and XPD.  Some patients may have mutations
            may be the leukemogenic mechanism in at least some patients with   in  other  genes  that  have  yet  to  be  described.  While  it  is  unlikely
            therapy-related disease, rather than accumulation of DNA damage   that  a  major,  frequently  mutated  pathway  remains  undiscovered
            induced by the chemotherapy itself.                   in  MDS,  study  of  these  low-frequency,  “long-tail”  mutations  may
                                                                  yield valuable further insights into the molecular pathogenesis of the
                                                                  disease.
            Tyrosine Kinases and Growth Factor Receptors
            Mutations in tyrosine kinase and growth factor receptor genes are   Karyotypic Abnormalities
            typically associated with proproliferative signals and occur in a wide
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            range  of  myeloid  malignancies,  including  AML  (FLT3 ),  MPNs   Chromosomal abnormalities, larger-scale genetic aberrations that can
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            (JAK2  and MPL ), and mast cell disorders (KIT).  While they   be detected on either karyotype or FISH, are also common events in
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            do occur in MDS, they are usually late, subclonal events that often   MDS.   The  most  common  types  of  abnormalities  in  MDS  are
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            mark progression to secondary AML.  A few of these deserve specific   deletions  or  duplications  of  very  large  chromosomal  regions;  as
            mention.  Activating  mutations  in  NRAS  are  the  most  frequent   opposed  to  some  other  hematologic  cancers,  translocations  and
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