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Chapter 98  Principles of Cell-Based Genetic Therapies  1553


            platform for more direct comparison with previous γ-retrovirus and   A number of gene therapy trials for ADA deficiency were initiated
            lentivirus trials with respect to safety and efficacy.  in the early 1990s, targeting retroviral gene transfer into various cell
              Strikingly, in contrast to five cases of insertional mutagenesis in   types, including peripheral blood lymphocytes, umbilical cord blood,
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            the two SCID-X1 trials, no adverse events have been reported in the   BM,  and  CD34   selected  stem  cells. These  early  studies  failed  to
            10  patients  treated  in  the  ADA-SCID  trial,  despite  a  similar  RIS   produce clear efficacy. By contrast, more recent studies introduced
            pattern observed in this patient group. There have been no leukemias   key modifications to the gene therapy protocol, including the use of
            reported in more than 40 patients treated worldwide (including in   a reduced-intensity myelosuppressive conditioning regimen and the
            London,  Los  Angeles,  and  at  the  NIH)  and  most  of  these  have   withdrawal of concurrent PEG-ADA replacement. The Milan-based
            benefited  from  gene  therapy. The  observation  of  the  difference  in   group of Aiuti and colleagues have reported on their initial experience
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            leukemia in these trials has led to the proposal of a “disease effect”   with  10  children.   Patients  were  conditioned  with  4 mg/kg  of
            contributing  to  oncogenesis  of  γ-chain  gene  therapy.  Woods  and   busulfan before the infusion of transduced cells. The mean age at the
                                                    –/–
            colleagues  demonstrated  lentiviral  transduction  of  γc   mice  with   time  of  gene  therapy  was  2.2  years.  All  children  on  this  trial  are
            vectors  containing  the  human  common  γ-chain  (cγ)  or  an  inert   healthy and thriving, with the longest published follow-up time now
                                       8a
            control gene at very high viral doses.  They observed the induction   more  than  64  months.  Gene  therapy  has  resulted  in  a  substantial
            of  T-cell  malignancies  in  one-third  of  the  animals  receiving  cγ-  increase of lymphocyte counts and normalization of T-cell function.
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            transduced cells but not in the control groups. The merit of this very   A recent update on this trial,  published in abstract form, reports that
            limited study was subsequently challenged, primarily on the basis of   18 patients have been treated and are alive and, of these, 15 do not
            a  viral  dose  much  higher  than  that  used  in  clinical  scenarios  and   require replacement enzyme treatment.
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            incomplete data on the pathogenesis of the malignancies, particularly   Similarly,  four  patients  have  been  treated  in  London.   One
            as they relate to the downstream activation level of a key signaling   patient  that  has  been  reported  in  detail  had  been  treated  with
            target  of  the  common  γ-chain,  Janus  kinase  3,  in  the  tumors.  In   PEG-ADA for 3 years but showed a gradual decline in T-cell numbers
            addition, the lentiviral vector used in this study incorporated a hybrid   despite effective metabolic correction. Because a matched BM donor
            promoter or enhancer element that is extremely powerful and likely   was not available, the patient was enrolled on the ADA-SCID gene
            to  possess  a  greater  transactivating  potential  than  promoter  or   therapy trial. PEG-ADA replacement was stopped 1 month before
            enhancer elements that would be considered for clinical gene therapy   gene therapy, and the patient was conditioned with a single dose of
            use. More recent occurrence of leukemia in another trial for Wiskott-  140 mg/m2  of  melphalan  before  infusion  of  the  transduced  BM
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            Aldrich syndrome (WAS; see later) using the same vector backbone   CD34  cells. At the time of the last published follow-up, the patient
            further  challenges  the  presence  of  SCID-X1  disease  or  transgene   was 2 years from gene therapy, clinically well, and off prophylactic
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            effects in these leukemias.                           antibiotic therapy.  An increase in T-cell numbers and normalization
              In  summary,  thus  far,  5  out  of  20  patients  treated  with  gene   of the proliferative response have been noted. Importantly, no adverse
            therapy  for  SCID-X1  have  encountered  a  life-threatening  severe   events have occurred thus far in the patients treated for ADA-SCID
            adverse  event,  thought  to  be  triggered  by  retroviral  activation  of   at these two centers.
            LMO2 in 4 patients. Four patients were salvaged with chemotherapy,   Aiuti and colleagues recently published a comprehensive genome-
            and  one  patient  succumbed  to  the  disease  after  an  unsuccessful   wide  analysis  of  RIS  of  five  patients  treated  in  Milan. This  paper
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            allogeneic  BMT.  At  this  point,  the  use  of  MLV-based  retroviral   analyzed  the  RIS  patterns  in  CD34   cells  before  infusion  as  well
            vectors  with  LTR  promoter  enhancer  elements  intact  is  viewed  as   as RIS in vivo up to 47 months after gene therapy. As anticipated,
            contraindicated in this disease by most investigators in the field. The   a nonrandom proviral integration pattern, favoring TSS and gene-
            continued development of safety-enhanced vectors and the validation   dense regions, was observed in the pretransplant cells. RIS observed
            of these vectors in clinically relevant systems have emerged as a major   in vivo in T cells were additionally enriched for TSS, suggesting the
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            priority in the field, and, as noted above, an international trial has   occurrence of in vivo selection. More recently, Aiuti and colleagues
            recently  been  reported  using  a  γ-retrovirus  that  is  deleted  of  LTR   have demonstrated that cellular genes in the proximity of the pro-
            enhancer elements. Transgene expression is mediated by a weak cel-  viral integration site are subject to moderate dysregulation in gene
            lular  promoter  in  this  vector.  Data  suggest  that  early  efficacy  is   modified T-cell clones isolated from patients. However, in contrast
            maintained  despite  lower  expression  of  the  cγ-chain  and  that  the   to  the  SCID-X1  trial,  no  in  vivo  skewing  toward  RIS  in  genes
            deletion of the γ-retrovirus enhancer is a key to improved safety. 6  affecting survival, cell cycling, signal transduction, or proliferation
                                                                  were observed, making a clonal dominance effect appear less likely.
                                                                  Interestingly,  only  one  RIS  was  detected  at  the  MDS-EVI1  locus
            Adenosine Deaminase Deficiency                        and  became  undetectable  at  later  time  points. This  is  in  contrast
                                                                  to  the  clonal  dominance  of  MDS-EVI1  integration  sites  observed
            ADA is a housekeeping enzyme of the purine metabolic pathway that   in  the  X-linked  Chronic  Granulomatous  Disease  trial  (see  later).
            is expressed in all tissues of the body. Deficiency of this enzyme leads   Additionally, an overrepresentation of RIS was noted in the proximity
            to a buildup of toxic metabolites with detrimental systemic effects,   of the CCND2 and LMO2 genes, with a total of 5 out of 523 RIS
            including neurodevelopmental deficiencies, sensorineuronal deafness,   recovered  in  vivo.  Notably,  the  CCND2  insertions  were  detected
            and  skeletal  abnormalities.  Importantly,  ADA  deficiency  causes   only in the first 2 years of follow-up and not subsequently. LMO2
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            abnormal T-, B-, and NK-cell development, resulting in the SCID   insertions  were  also  overrepresented  in  the  pretransplant  CD34
            phenotype. As is the case with the more common SCID-X1, untreated   samples, highlighting the fact that the LMO2 gene is a hotspot for
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            patients generally succumb to severe opportunistic infections in the   retroviral  integration  in  human  CD34   cells. The  lack  of  in  vivo
            first year of life. Treatment strategies used to manage affected patients   expansion of clones carrying LMO2 RIS indicates that this integra-
            include  allogeneic  HSCT,  enzyme-replacement  therapy,  and,  more   tion  site  may  not  be  sufficient  to  mediate  clonal  dominance  and
            recently, gene therapy. Allogeneic HSCT from a human leukocyte   leukemic transformation. Rather, additional cooperating mutations
            antigen-matched  family  donor  offers  good  immunologic  and  bio-  or insertions are required for malignant transformation. The lack of
            chemical  correction  with  73%  survival.  However,  outcomes  after   malignant transformation in two ADA-SCID trials may point to the
            mismatched and haploidentical transplants are less impressive. Like-  role of the genetic background or the role of the therapeutic transgene
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            wise, the exogenous replacement of ADA, administered in a polyeth-  introduced  into  human  CD34   cells.  However, the patient cohort
            ylene glycol (PEG) conjugate by intramuscular injection on a weekly   remains relatively small, and follow-up is still short term. As noted
            or  twice-weekly  schedule,  results  in  systemic  detoxification  and   previously, over 40 patients have now been treated worldwide, with
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            immune reconstitution. In the long term, however, about half of the   no leukemias reported in any trial in this disease to date.  An ongoing
            patients receiving PEG-ADA replacement continue to require IVIG   new multicenter trial utilizes a lentivirus platform (NCT01279720).
            infusions, and some patients show a decline in T-cell numbers over   Overall, the genotoxicity profile in the ADA-SCID trials has been
            time.                                                 sufficiently  favorable  to  continue  to  recommend  this  experimental
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