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Chapter 98  Principles of Cell-Based Genetic Therapies  1551


            azacytodine  for  applications  in  cancer.  For  noncancer  applications   epithelium, and muscle. However, it was subsequently appreciated
            (for  coselection  of  a  nonselectable  therapeutic  gene  in  a  genetic   that the requirement of stimulating HSCs into division with various
            disease  application),  the  mutagenic  potential  of  the  chemotherapy   cytokines to effect efficient transduction with γ-retrovirus vectors may
            agent must be considered as a risk in relation to the overall benefit   have negative effects on engraftment, or that a large fraction of HSCs
            of  the  gene  therapy  procedure.  Several  chemoresistance  genes  and   remain quiescent and therefore resistant to transduction during clini-
            chemotherapy drug combinations are currently under investigation   cal transduction protocols. After several groups reported successful
            for this application, and encouraging preclinical studies have led to   transduction  of  primitive  HSC  populations  in  protocols  in  which
            a limited number of early-phase human studies in cancer patients. In   these cells remained resistant to transduction by γ-retroviruses, the
            a recently reported human trial in which MGMT gene transfer was   adaption of lentivirus vectors has now included several recent human
            utilized,  patients  receiving  temazolamide  for  treatment  of  brain   trials,  and  initial  results  are  encouraging.  In  a  trial  for  childhood
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            tumors  tolerated  significantly  more  chemotherapy  compared  with   cerebral adrenoleukodystrophy (CCALD),  long-term “marking” in
            historical controls, with transient increases in gene-modified cells in   the myeloid compartment appears to be 10% to 20%, a level that is
            the peripheral blood in a few patients. 2             about 100-fold higher than the marking in the myeloid compartment
                                                                  seen  in  previous  trials  in  immunodeficiency  conditions  that  used
                                                                  γ-retrovirus vectors. In addition to the safety advantage of SIN vector
            Lentivirus Vectors                                    design used in all lentivirus vectors, there is an additional theoretical
                                                                  advantage of the preference of lentiviruses for integration away from
            One of the key advances in the gene therapy field in the past decade   transcription start sites (TSS) of genes in contrast to γ-retroviruses.
            has been the development of recombinant vectors based on lentivi-  However,  the  recent  experience  with  a  lentivirus  vector  used  in  a
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            ruses,  including  human  immunodeficiency  virus  (HIV).  These   single patient with thalassemia,  in which abnormal splicing resulted
            vectors were originally developed after the observation that targets of   in  clonal  expansion  in  the  erythroid  compartment,  suggests  that
            HIV included more differentiated cells, such as macrophages, that   insertion within genes including intronic and noncoding regions of
            are often also postmitotic, suggesting this group of retroviruses has   genes may also have potential adverse effects on endogenous sequences.
            evolved  a  method  of  circumventing  the  block  in  infection  of   These trials are described in more detail later. Thus, the long-term
            γ-retroviruses seen in nondividing cells. Investigators demonstrated   safety of lentiviruses in human trials remains to be determined, and
            lentivirus vectors derived from HIV were capable of infecting non-  important aspects of insertional mutagenesis are described in more
            dividing neurons after direct injection into the brain. Subsequently,   detail later.
            Naldini and colleagues showed efficient infection of growth-arrested
            cells.  As  with  γ-retroviruses,  lentivirus  vectors  use  key  viral  gene
            products in trans to generate replication-defective infectious particles   Foamy Virus Vectors
            carrying the transgene of interest. To date, most lentivirus vectors use
            vesicular stomatitis virus as envelope sequence, which provides a very   Foamy  viruses  possess  several  features  that  have  been  exploited  to
            broad range of target cells susceptible to lentivirus vector transduc-  yield vectors for the purpose of transducing HSCs. Foamy viruses are
            tion. In the case of lentivirus vectors, viral Gag and Pol, as well as   members of the spumaretroviruses family. They have been shown to
            Tat and Rev protein expression are required in trans for efficient virus   be endemic retroviruses in a wide range of animals but are not found
            production  along  with  the  envelope  proteins.  These  proteins  are   in humans. These vectors are the largest of the retroviruses (≈14 kb)
            usually supplied from separate plasmids, and recombinant lentivirus   and  thus  yield  vectors  with  a  capacity  to  efficiently  package  large
            production is today generally created using “four-plasmid” systems   amounts of genetic sequences. The virus has a DNA genome that is
            encompassing all the necessary viral proteins on three plasmids and   reversed transcribed within the virion particle, forming a stable pre-
            the transfer vector sequences on the fourth plasmid. In addition to   integration complex within the transduced cell. As with γ-retrovirus
            gag  and  pol,  the  transfer  vector  contains  all  the  virus  regulatory   vectors, the virus packaging signals have been successfully exploited
            sequences required in cis for packaging an infectious particle, includ-  to allow production of high-titer, replication-free vector stocks. Based
            ing the psi packaging sequence, integrase, and reverse transcriptase.   on accidental exposure of a limited number of animal care workers,
            Thus, generation of high-titer recombinant virus is more complicated   it has been reported that infection of humans with wild-type foamy
            than  γ-retroviruses  and  remains  a  significant  issue  for  large-scale,   virus has no pathologic effects. Foamy virus vectors have been used
            clinical grade production for use in human trials.    to  successfully  transduce  mouse  and  human  hematopoietic  cells.
              To  reduce  the  chances  of  generation  of  replication-competent   Proof-of-principle work by Hickstein’s group has demonstrated cor-
            retroviruses (RCRs), a major safety concern with HIV, most of the   rection of canine leukocyte adhesion deficiency using a foamy virus
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            nonessential viral sequences have been removed from currently uti-  vector expressing CD18 after transduction and infusion of CD34
            lized vectors. This included viv, vpu, vpr, and nef genes, and subse-  cells after submyeloablative conditioning. No human trials have been
            quently tat, an important regulator of viral transcription. Recombinant   opened to date using this vector system, but several are planned for
            vectors  generated  without  these  sequences  were  demonstrated  to   the future.
            efficiently infect a variety of cells. RCR testing is based on sensitive
            assays  to  detect  Gag  protein  by  p24  immunoassays  or  polymerase
            chain reaction. In addition, lentivirus vectors have traditionally been   Alpharetroviruses
            produced using the “self-inactivating design” (SIN) for added safety
            because  of  reduced  risk  of  recombination  with  and  subsequent   Retrovirus  vectors  derived  from  Rous  sarcoma  virus,  which  is  a
            mobilization of endogenous HIV viruses. The transfer vector thus   member of the alpharetrovirus family, have been described. Although
            contains a deletion of the 5′ LTR U3 region and is devoid of viral   these vectors maintain genomic integration as part of the viral life
            enhancer and promoter sequences. During reverse transcription, the   cycle, they have attracted recent attention because of their propensity
            5′ LTR is replicated, and the integrated provirus is thus devoid of   to integrate in a relatively neutral fashion with respect to promoter
            both 5′ and 3′ U3 regions. In SIN constructs, the transgene of interest   regions and TSS of genes. In large animal studies, alpharetrovirus-
            is thus expressed from an internal promoter that can be chosen with   transduced  HSC-derived  progeny  demonstrated  integrations  that
            varying strengths. This added safety feature ultimately has also proven   were not clustered in gene-rich CpG or TSS regions of the genome.
            important to reduce the risk of insertional mutagenesis (see later), by   The development of a self-inactivating alpharetrovirus with a split-
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            which integration near cellular genes are inadvertently activated by   packaging design by Schambach and colleagues  has provided proof-
            the LTR enhancer sequences of vectors.                of-principle  with  respect  to  the  capacity  to  generate  high-titer,
              Lentivirus  vectors  were  originally  developed  for  use  in  a  wide   replication-free vector stocks from stable producer cell lines that use
            range  of  tissues  in  which  cells  are  largely  nondividing.  Early     internal promoters to express transgenes in a potentially safer fashion
            work  focused  on  brain,  retinal  cells,  liver,  pancreatic  islets,  airway   than  γ-retrovirus  vectors.  Such  vectors  have  been  demonstrated  to
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