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C H A P T E R          98 

                                           PRINCIPLES OF CELL-BASED GENETIC THERAPIES


                                                                                               David A. Williams





            The  use  of  gene  transfer  to  treat  human  diseases  has  now  been   manipulation  has  been  the  most  difficult  to  consistently  meet  in
            demonstrated  to  be  efficacious  in  a  limited  number  of  instances.   human applications using current gene transfer technology.
            Proof-of-principle  successes  in  several  monogenic  diseases—both   Since the early development of virus vectors, blood-forming cells
            hematologic and nonhematologic—have been published and widely   have been used as one optimal target for ex vivo gene transfer studies.
            publicized  in  the  past  decade. The  previous  occurrence  of  serious   For this purpose, hematopoietic stem and progenitor cells (HPSCs)
            adverse events in some trials related to insertional mutagenesis has   are isolated, manipulated in the laboratory, and administered back to
            stimulated rapid development of safer vector systems. This chapter   the patient. The advantages of these cells as targets of gene transfer
            discusses  the  basic  biology  of  vector  systems  applicable  to  blood   are multiple. First, all blood cells are derived from a common progeni-
            diseases, the details of the application of gene therapy to blood dis-  tor cell, the hematopoietic stem cell (HSC), which is both long lived
            eases  using  specific  trials  as  examples  of  this  technology,  and  the   in vivo and capable of significant self-renewal. The latter capacity and
            modifications  in  vector  systems  driven  by  clinical  experience  that   the  pluripotency  of  HSCs  is  exploited  to  amplify  the  genetically
            predict future trials. The chapter also discusses the evolving field of   manipulated cells into large cell numbers of multiple blood lineages
            somatic  cell  reprogramming  and  genome  editing  that  may  impact   derived from the genetically altered cells in vivo. There is a long and
            clinical applications in the future.                  successful  experience  in  obtaining  these  stem  cells  from  the  bone
                                                                  marrow  (BM)  and  peripheral  and  umbilical  cord  blood. There  is
            HEMATOLOGIC DISEASES, CELLULAR TARGETS, AND           extensive experience in the use of HSCs in the clinical setting for
                                                                  transplantation, and there is experience in purification of these cells
            THE BASIS FOR GENETIC THERAPIES                       and limited knowledge of the requirements for ex vivo manipulation
                                                                  of  the  cells.  In  addition,  the  experience  of  HSC  transplantation
            Gene therapy is defined as the introduction of new genetic material   (HSCT) has defined a variety of genetic diseases in which the phe-
            into the cells of an organism for therapeutic purposes. Broadly speak-  notype can be altered by the successful engraftment of normal allo-
            ing, two types of gene therapy can be envisioned. The introduction   geneic donor cells. Finally, the blood system is involved as a major
            of genetic material into germ cells such that the new DNA can be   dose-limiting  organ  in  cancer  therapies  and  both  a  target  and  an
            expected to be passed into the gene pool. This is termed germline gene   effector organ in immune reactions, providing a large group of dis-
            therapy and is currently banned in the United States and around the   eases  that  could  theoretically  be  approached  using  gene  transfer
            world. The potential for newer methods of genome engineering to   technology.  As  noted  earlier,  there  are  already  a  large  number  of
            be utilized in clinical applications (discussed later) has led to more   monogenic diseases of the blood extensively characterized, with more
            recent calls for extending this restriction. In contrast, introduction of   being defined at the molecular level on a regular basis as whole-exome
            new genetic material into specialized cells of the body with no risk   and whole-genome sequencing is being applied to rare disease phe-
            of the new genetic material being passed onto subsequent generations   notypes.  In  addition  to  HSC  targets,  another  application  of  gene
            is termed somatic gene therapy. The ultimate goal of gene therapy is   transfer technology exploits the experience in adoptive T-cell immu-
            to correct the targeted genetic disease by replacement of the defective   notherapy. In this application, T cells (and less well developed to this
            gene in situ. Such gene replacement could be envisioned via a process   point, other immune effector cells) are modified ex vivo in an attempt
            termed  homologous  recombination.  Homologous  recombination  in   to enhance potency and specificity. This application of gene transfer
            mammalian cells is widely practiced in laboratories but up to now   technology will not be reviewed here.
            has  been  relatively  inefficient,  although  newer  technology  may   The field of gene therapy is rapidly evolving. Successes of “proof-
            overcome  some  of  the  previous  limitations  to  efficient  genome   of-principle” small trials have demonstrated the utility of gene transfer
            editing. Advantages of this approach would include a reduction in   approach in a sizable number of patients but in a limited number of
            the risk of inadvertent disruption or dysregulation of expression of a   diseases. The technology itself is quickly evolving in response to new
            critical gene sequence and regulated (appropriate level and distribu-  understanding of viruses, the regulation of gene expression, and gene
            tion) expression of the normal (replaced) gene. However, the frequency   editing. The application of gene transfer technology to HSC gene
            of homologous recombination (in contrast to random chromosomal   therapy has been made possible by exploitation of viruses that have
            integration) in mammalian cells and primary tissues makes therapeu-  evolved the capacity to efficiently and precisely insert viral genomes
            tic use of homologous recombination somewhat impractical at this   into cellular chromosomes of infected cells. The field has taken more
            point. Methods to effect homologous recombination have improved   than  30  years  to  evolve  to  its  current  state  of  clinical  application.
            in the past 5 years and may make this goal attainable in the future.  Although this might be viewed as a slow pace, in reality, this time
              The requirements for successful application of our current gene   frame parallels the development of many other novel therapies. This
            transfer technology for treatment of human diseases include knowl-  developmental  phase  also  reflects  the  complexities  of  the  biologic
            edge  of  the  abnormal  gene  sequence  responsible  for  the  disease   systems involved and the caution required in moving forward in the
            phenotype  and  the  availability  of  the  corresponding  normal  gene   face of serious adverse events seen in early safety trials. It is indeed
            sequence  that  can  be  packaged  into  current  vector  backbones  for   an  exciting  time  with  respect  to  the  clinical  application  of  gene
            efficient recombinant virus production. In addition, the cells respon-  transfer technology in human diseases.
            sible for the disease phenotype must be identified and accessible for
            genetic manipulation. Finally, a means of introducing and expressing
            the correct gene sequence in cells such that the disease phenotype can   VECTOR SYSTEMS
            be reversed is needed. Although effectively accomplished nearly three
            decades ago in murine studies, this latter requirement encompassing   The  initial  impetus  to  develop  gene  transfer  for  human  studies
            both  in  vivo  administration  of  DNA  sequences  and  ex  vivo  cell   derived  from  the  exploitation  of  oncoretroviruses,  mainly  murine

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