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680          ParT Six  Systemic Immune Diseases


        are associated with increased risk of a variety of autoimmune
        diseases, including type I DM, Graves disease, and RA. Similarly,   Dominance and Crypticity
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        a functional polymorphism in protein tyrosine phosphatase,   Studies by Sercarz et al.  have stressed that although antigens
        non–receptor type 22 (PTPN22), has been identified as a major   contain numerous potential determinants that could be presented
        risk factor for several human autoimmune diseases, including SLE,   on major histocompatibility complex (MHC) class II molecules
        RA, and type I DM. Although the exact mechanisms underlying   during antigen processing, not all determinants in a particular
        susceptibility to autoimmunity remain unclear, in both cases, the   molecule are equally likely to be efficiently presented. Those
        polymorphisms appear to regulate the balance of stimulatory   determinants that are most efficiently presented are termed
        and inhibitory signaling in effector and Tregs, favoring effector   “dominant”; those that are not loaded onto MHC class II to a
        T-cell activation.                                     significant degree are termed “cryptic.” For self antigens, it is
           Recent genetic studies have also suggested a potential role for   likely that a constant set of dominant determinants are generated
        innate immune sensors in autoimmunity, focusing attention on   during antigen processing under most circumstances, with similar
        the critical balance between activation of the immune response   outcomes in the thymus and the periphery. Antigens processed
        to mitigate infectious damage and limiting the magnitude of   by the “standard” pathway are, therefore, fully tolerized, with
        the response to avoid immunopathology. Gain-of-function (GOF)   the T-cell repertoire purged of reactivity to the dominant self.
        variants of IFIH1 (encoding melanoma differentiation-associated   However, the balance of dominant and cryptic epitopes presented
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        protein 5 [MDA5]) are associated with susceptibility to SLE.    during antigen processing is influenced significantly by changes
        This RNA helicase is essential for the detection of cytoplasmic   of protein structure, which occur during various relevant physi-
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        viral RNA and activation of type I interferon (IFN) secretion   ological states  (Chapter 6). Several potential mechanisms that
        by infected cells. The increased susceptibility to SLE with increased   may alter antigen processing to reveal potentially cryptic epitopes
        function of this antiviral pathway suggests that excessive IFN   are summarized below.
        signaling may facilitate the development of autoimmunity. Key
        immune signaling pathways that protect the host from deleterious   High-Affinity Binding of Antigen to Ligands or Antibodies
        infectious and malignant challenges but potentially also enhance   Several studies have demonstrated that antigen processing can
        damage of self tissues in the process may, therefore, be important   be dramatically altered when the antigen binds with high affinity
        susceptibility factors in autoimmune diseases.         to a ligand or antibody. The study by Simitsek and colleagues
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           Thus there are many barriers to the development of autoim-  (reviewed in Lanzavecchia ) demonstrated that presentation of
        munity, including effective tolerance induction in the thymus   T-cell determinants in tetanus toxin can be either enhanced or
        and the periphery, tightly regulated immune signaling, and   suppressed as a direct consequence of antibody modulation of
        homeostatic pathways of immunoregulation to limit anti-self   antigen processing in human B-lymphoblastoid cells. Remark-
        responses should they occur. It is likely that the genetic susceptibil-  ably, a single bound antibody can simultaneously enhance the
        ity to autoimmunity in outbred humans represents an integrated   presentation of one T-cell determinant by more than 10-fold
        threshold involving genes that regulate these various pathways—  while strongly suppressing the presentation of a different T-cell
        upon which environmental and stochastic events act to accomplish   determinant. Biochemical analyses have shown that both the
        disease initiation and propagation.                    suppressed and boosted determinants fall within an extended
                                                               domain of antigen stabilized by this antibody during proteolysis.
        PHASE 2: INITIATION                                    Thus ligand-induced changes in processing can destroy dominant
                                                               determinants or reveal cryptic self determinants. Similar observa-
        Initiation of an adaptive immune response requires presentation   tions have also been made with numerous other antigen–antibody
        to T cells of suprathreshold concentrations of molecules with   partners. 15
        structure not previously tolerized by the host. One of the more
        persuasive models proposed to explain the persistence of poten-  Tissue-Specific Protease Expression
        tially autoreactive T cells within the repertoire of the host is that   The study by  Watts and associates (reviewed in Darrah and
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        of immunodominance of T-cell epitopes. This model provides   Rosen ) showed that a principal human leukocyte antigen–D
        major insights into the pathogenesis of autoimmunity. 11,14  related type 2 (HLA-DR2)–restricted epitope in myelin basic
                                                               protein amino acids 85–99 (MBP85–99) contains a processing
                                                               site for asparagine endopeptidase (AEP), with cleavage by AEP
                                                               abolishing the epitope. AEP activity is, therefore, a critical factor
            KEY CONCEPTS                                       in presentation of this epitope.  In human antigen-presenting
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         Potential Mechanisms That Can Alter Antigen           cells (APCs), presentation of MBP85–99 is inversely proportional
         Processing to Reveal Potentially Cryptic Epitopes     to the amount of cellular AEP activity, and inhibition of AEP
                                                               greatly enhances presentation of the MBP85–99 epitope. Interest-
          •  Modification of autoantigen processing through high-affinity binding   ingly, both MBP and AEP are expressed in the thymus, AEP at
           to ligands or antibodies                            abundant levels. These data suggest that this major epitope in
          •  Distinct proteolytic machinery in the thymus and periphery—or dif-
           ferential modification of proteolytic activity      neurological autoimmunity may not be presented under normal
          •  Modification of autoantigen structure that modifies its processing by   circumstances in the thymus as a result of destruction by AEP,
           endogenous antigen-presenting cell (APC) machinery, generally through   therefore  raising  the  potential  for  later  presentation  in  the
           posttranslational modifications                     periphery in the setting of decreased AEP activity.
          •  Novel proteolytic events not present in the normal APC pathways
           (e.g., novel cleavage during cell death or damage or inflammation)  Posttranslational Modification of Autoantigen Structure
          •  Novel forms of autoantigens generated by mutation, truncation, or
           splicing                                            Autoantigens undergo a variety of posttranslational modifications,
                                                               including phosphorylation, proteolytic cleavage, ubiquitination,
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