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Chapter 58  Pathobiology of Acute Myeloid Leukemia  919


            murine  models,  expression  of  mutant  NRAS  or  KRAS  results  in  a   in  approximately  20%  of  patients  with  de  novo  AML,  but  nearly
            spectrum of myeloid disease, with variable features of acute leukemia,   30%  of  patients  with  a  normal  karyotype.  Nearly  50%  of  the
            myeloproliferation,  or  MDS/MPN  overlap.  Consistent  with  this   DNMT3A  mutations  are  heterozygous  missense  substitutions  at
            finding,  RAS  is  frequently  mutated  in  patients  with  MPNs  and   codon R882 (most frequently R882H); the remainder are deletions,
            CMML.                                                 frameshifts, and missense substitutions throughout the open reading
                                                                  frame.
                                                                    Mutations in ten-eleven-translocation 2 (TET2), have been identi-
            Transcription Factors                                 fied in 10% to 30% of patients with AML, and are enriched in patients
                                                                  with prior MDS or MPN. Members of the TET gene family include
            In addition to their frequent identification in novel fusion proteins,   TET1  and  TET2;  TET1  is  also  rearranged  in  t(10;11)(p12;q23).
            transcription factors are also recurrently mutated in AML. RUNX1   TET2  converts  5-methylcytosine  to  5-hydroxymethylcytosine,  an
            mutations occur in approximately 5% to 15% of all patients with   initial step in the reversion to unmethylated cytosine. Hydroxylation
            AML, but are slightly more common in patients with intermediate-  of methylated CpG-rich regions by TET2 activates gene programs
            risk  AML,  particularly  in  association  with  trisomy  8  or  trisomy   important  for  cellular  differentiation,  including  the  homeobox  A
            13.  Approximately  80%  of  RUNX1  mutations  are  located  in  a   cluster.  By  contrast,  TET2  loss-of-function  mutations  are  associ-
            DNA-binding  domain  that  is  homologous  to  the  Drosophila  runt   ated  with  impaired  differentiation.  Mice  harboring  a  TET2  null
            protein.  C-terminal  domains  of  RUNX1  are  involved  in  nuclear   allele display enhanced stem cell self-renewal and develop myeloid
            matrix localization and recruitment of transcriptional trans-activating   malignancies  with  underlying  features  consistent  with  CMML  or
            and  repressing  factors.  Overexpression  of  mutant  RUNX1  in  mice   MDS. TET2 mutations do not have a consistent impact on AML
            causes AML with dysplastic changes, and, in combination with EVI1   prognosis in multivariate analysis.
            mutations, results in a more rapid AML phenotype.       Mutations in IDH1 or IDH2 are also involved in TET deregula-
              CEBPA is mutated in almost 10% of AML cases; these mutations   tion  via  the  oncometabolite  2-hydroxyglutarate  (2-HG).  IDH1  is
            are enriched in younger patients and patients with otherwise normal   primarily  cytosolic,  while  IDH2  localizes  to  mitochondria.  These
            cytogenetics. CEBPA encodes the CCAAT/enhancer binding protein-  proteins  normally  decarboxylate  isocitrate  to  form  α-ketoglutarate
            alpha, a basic leucine zipper transcription factor. Patients with CEBPA   via the reduced form of NADPH, a key reaction in the Krebs cycle.
            mutations most often have normal cytogenetics; mutations result in   Mutational hotspots include codon R132 in IDH1 and codons R140
            loss of function and typically arise in the transactivation domain or   or R172 in IDH2. IDH1/2 mutations are found in approximately
            in the basic leucine zipper domain. Favorable prognosis is restricted   5% to 10% and 15% to 20% of patients with AML, respectively.
            to cases with biallelic CEBPA mutations, which is associated with a   The  mutations  are  enriched  in  cases  with  a  normal  karyotype
            distinct  gene  expression  signature.  When  biallelic  mutations  were   and  frequently  co-occur  with  NPM1  mutations.  Mutant  IDH1/2
            engineered  in  a  mouse  model,  hematopoietic  differentiation  was   catalyzes  the  conversion  of  α-ketoglutarate  to  2-HG,  which  sup-
            impaired, but cooperating mutations were required for AML trans-  presses TET2 due to competitive inhibition at the α-ketoglutarate
            formation, such as the addition of FLT3-ITD.          binding  site.  Through  this  mechanism,  excess  2-HG  results  in  a
                                                                  DNA hypermethylation pattern similar to that observed in TET2-
                                                                  mutated  AML;  however,  this  oncometabolite  also  interferes  with
            Tumor Suppressor Genes                                other  α-ketoglutarate–dependent  enzymes,  including  members  of
                                                                  the  Jumonji-C  domain-containing  histone  demethylases.  Mouse
            Mutations  in  tumor  suppressor  genes  facilitate  the  development  of   models with IDH1 mutations in hematopoietic cells develop a disease
            AML. Common examples include the canonical tumor suppressors   phenotypically similar to human MDS.
            TP53 and Wilms tumor 1 (WT1). Mutations in TP53 are found in
            fewer than 10% of AML cases overall, but are enriched in patients
            with AML with a complex karyotype, two-thirds of which will also   Polycomb Complex
            harbor a mutation in TP53. TP53 is a transcription factor that regu-
            lates multiple signaling pathways in response to cellular stress, with an   The polycomb complex plays a major role in silencing transcription
            output that may culminate in cell cycle arrest, senescence, or apoptosis.   during development; it functions in conjunction with trithorax group
            Mutations occur throughout the TP53 gene, usually resulting in loss   proteins,  which  activate  transcription,  to  epigenetically  modulate
            of function; over half of cases have loss of heterozygosity at 17p.  genes  during  embryogenesis.  Recurrent  mutations  in  polycomb
              Mutations  in  WT1  occur  in  fewer  than  10%  of  patients  with   complex genes or regulators have been identified in several cancers,
            AML, but wild-type WT1 is frequently overexpressed. WT1 is a zinc   including  AML.  Additional  Sex  Combs-Like  1  (ASXL1)  is  an
            finger transcription factor that is required for normal development.   enhancer of the trithorax and polycomb genes; it plays a critical role
            Mutations may occur throughout the gene and generally predict loss   in HOX gene expression during embryogenesis. Mutations in ASXL1
            of function. One mechanism by which loss of WT1 may influence   in AML typically occur in exon 12 and result in loss of function.
            tumorigenesis appears to relate to DNA methylation; mutations in   Expression of mutated ASXL1 in mice results in aberrant HOX gene
            WT1 result in a DNA methylation pattern similar to that in TET2   activation, and, when conditionally deleted in hematopoietic cells,
            mutated AML, apparently due to a lost interaction between WT1   results in anemia and leukopenia with multilineage myeloid dysplasia.
            and wild-type TET2. In addition to loss of function, WT1 may also   Acquired somatic mutations in ASXL1 occur in approximately 10%
            have  oncogenic  effects.  In  a  RUNX1-RUNX1T1  mouse  model  of   to 20% of patients with AML and are enriched in those with underly-
            AML, forced overexpression of WT1 resulted in more rapid progres-  ing MDS.
            sion to AML.                                            ASXL2 is also involved in regulation of the polycomb repressor
                                                                  complex, and mutations in ASXL2 are present in over 20% of patients
                                                                  with AML harboring the RUNX1/RUNX1T1 translocation; they are
            Regulators of DNA Methylation                         mutually exclusive with ASXL1 mutations in this group.
                                                                    The nuclear receptor binding SET domain protein 1 (NSD1) gene
            Methylation of cytosine residues is an important epigenetic mark that   encodes  a  histone  methyltransferase,  which  similarly  has  a  role  in
            contributes to regulation of gene expression. Genes encoding factors   normal development; germline mutations result in Sotos syndrome,
            directly or indirectly involved in DNA methylation or demethylation,   which  is  associated  with  a  number  of  childhood  cancers.  NSD1
            including TET2, DNMT3A, and isocitrate dehydrogenase-1 (IDH1)   methylates H3K36 and is associated with transcriptional activation.
            or IDH2, are recurrently mutated in AML.              NSD1 is involved as a fusion partner in the recurrent translocation
              DNMT3A  encodes  a  de  novo  methyltransferase  that  catalyzes   t(5;11)(q35;p15.5)  with  NUP98,  seen  in  approximately  15%  of
            cytosine methylation at CpG dinucleotides. These mutations are seen   pediatric AML, but less than 5% of adult AML, and is associated
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