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1014   Part VII  Hematologic Malignancies


        specificity to further improve outcomes is actively being investigated.   cytometry,  and  were  strongly  associated  with  the  presence  of  the
        Additionally,  a  novel  pathway  mediating  resistance  to  BCR-ABL1   TCF3-PBX1 rearrangement or 6q21 deletion, but rare in other ALL
        inhibition has been uncovered in Ph-positive ALL. Upon BCR-ABL1   subsets. 353,354  Interestingly, the oncogenic TCF3-PBX1 translocation
        inhibition, these cells markedly upregulate expression of the BCL6   itself directly binds and upregulates genes encoding key components
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        transcription factor, a well-known oncogene that is often translocated   of the B-cell receptor in these cases.  Active B-cell receptor signaling
                                  345
        in diffuse large B-cell lymphomas.  BCL6 then blocks activation   leads to downstream activation of SRC, SYK, and PI3K oncogenic
        of the p53 pathway via transcriptional repression of ARF and thus   signaling  pathways.  Importantly,  these  cases  are  sensitive  to  small-
        blocks  the  therapeutic  efficacy  of  monotherapy  with  imatinib  in   molecule inhibitors of kinases that mediate B-cell receptor signaling
        Ph-positive  ALL  cells.  Importantly,  inhibition  of  BCL6  activity   in preclinical models, thus providing a novel potential therapeutic
        genetically or using a peptide inhibitor of BCL6 has demonstrated   strategy for these patients. 353,354
        marked activity in patient-derived BCR-ABL1 xenografts grown in
        immunodeficient  mice,  highlighting  the  therapeutic  relevance  of
        these findings. 346                                   RAS Gene Mutations

                                                              Pioneering studies into the molecular etiology of cancer led to the
        BCR-ABL1–Like Acute Lymphoblastic Leukemia            identification  of  activated  homologs  of  either  HRAS  or  KRAS  in
                                                              human  tumor  DNA. 355,356   These  proto-oncogenes  were  originally
        Analysis of the gene expression signatures of patients with ALL has   identified on the basis of their homology with viral oncogenes. Gene-
        led to the identification of a new subtype of precursor B-cell ALL,   transfer methods identified an additional member of the RAS gene
        termed BCR-ABL1–like or Ph chromosome-like (Ph-like) ALL. These   family, called NRAS, 357,358  that had not been observed as a component
        cases were identified because they lack BCR-ABL1 translocations, yet   of  a  transforming  retrovirus.  Proto-oncogenes  of  the  RAS  family
        are characterized by a gene expression signature nearly identical to   (HRAS, KRAS, and NRAS) encode 21-kDa proteins that are associ-
        that of BCR-ABL1-positive ALL. These patients are at very high risk   ated  with  the  inner  surface  of  the  cytoplasmic  membrane  and  are
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        of  treatment  failure,  mirroring  the  poor  prognosis  of  BCR-ABL1   involved  in  growth  factor  receptor  signaling.   RAS  proteins  are
        ALL. 347,348  One common genetic feature common to both BCR-ABL   guanosine nucleotide-binding proteins (G proteins) that are GTP-
        and BCR-ABL–like ALL is the deletion of the Ikaros tumor suppres-  bound in their active form and GDP-bound in their inactive form.
           348
        sor.  However, in-depth genomic investigation of BCR-ABL1–like   The RAS proto-oncogenes are converted to the status of transforming
        ALL has also revealed that most of these cases harbor chromosomal   oncogenes  by  somatic  mutations  that  most  commonly  alter  the
        translocations or point mutations leading to dysregulated activation   amino acids specified by codons 12, 13, or 61. Mutated RAS genes
        of growth factor signaling pathways. These include activating trans-  lose their intrinsic GTPase activity, thus accumulating in their active,
        locations of the ABL1 kinase to “noncanonical” fusion partners, of   GTP-bound  conformation,  even  in  the  absence  of  growth  factor
        the cytokine receptor CRLF2 or the erythropoietin receptor EPOR,   binding to surface receptors. Aberrant RAS-mediated signaling con-
        or  activating  mutations  of  the  RAS  or  JAK-STAT  pathways. 349–351    tributes to transformation through activation of the PI3K and MAPK
        These findings have important clinical implications, as many of these   pathways. 359
        mutated genes are targetable with clinically relevant inhibitors, and   In ALL, mutations of codons 12, 13, or 61 of NRAS have been
        clinical  trials  testing  specific  targeted  agents  in  genetically  defined   found in approximately 10% of patients, while KRAS mutations have
        subsets of the disease are underway.                  been  identified  in  5%–10%  of  patients. 360,361   RAS  mutations  are
                                                              considerably more common in specific molecular subsets of ALL. Up
        NUP214-ABL1 in T-Cell Acute Lymphoblastic             to 50% of cases of MLL-rearranged ALL harbor mutations of NRAS
                                                                     361,362,363
                                                                            although these mutations can be subclonal and lost
                                                              or KRAS,
        Leukemia                                              at  relapse.   RAS  mutations  have  also  been  identified  in  approxi-
                                                                      363
                                                              mately 30% of Down syndrome-associated precursor B-cell ALL and
                                                                                                               364
        Although the BCR-ABL1 translocation is rare in T-cell ALL, ampli-  appear to be mutually exclusive of JAK2 mutations in this setting.
        fied episomes containing NUP214-ABL1 fusion genes have recently   RAS mutations appear to be more frequently found in the setting of
        been  described  in  approximately  6%  of  children  and  adults  with   relapsed  ALL  and  are  associated  with  a  poor  prognosis  in  this
                 352
                                                                    365
        T-cell  ALL.  These  episomes  appear  to  arise  via  a  mechanism  in   setting.  The development of an effective pharmacologic approach
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        which the genomic region of chromosome 9q34, which contains both   for  direct  inhibition  of  RAS  has  been  elusive.   However,  recent
        the NUP214 and ABL1 genes, is circularized in a manner that leads   studies in preclinical models of RAS-driven ALL have revealed the
        to the fusion of these two genes. The breakpoint in the ABL1 gene   therapeutic  potential  of  inhibitors  of  key  downstream  effectors  of
        in all of these cases occurs in intron 1, which is the same breakpoint   RAS signaling in ALL, including MEK and PI3K, thus providing a
        observed  in  Ph-positive  CML  and  precursor  B-cell  ALL,  but  the   rationale for clinical trials testing such an approach for RAS-mutant
        NUP214 breakpoints are variable. The wild-type NUP214 protein is   ALL. 365,367,368
        a  component  of  the  nuclear  pore  complex  and  may  contribute
        oligomerization motifs to the NUP214-ABL1 fusion oncogene. The
        NUP214-ABL1  fusion  protein  has  constitutively  activated  ABL1   PTEN-PI3K-AKT Mutations in T-Cell Acute
        tyrosine kinase activity, which is inhibited by the BCR-ABL kinase   Lymphoblastic Leukemia
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        inhibitor  imatinib.   The  therapeutic  potential  of  imatinib  or
        second-generation  tyrosine  kinase  inhibitors  for  NUP214-ABL1–  The  PI3K-AKT  signal  transduction  pathway,  which  is  negatively
        positive T-cell ALL is of considerable interest.      regulated by the PTEN tumor suppressor, induces cellular growth
                                                              and proliferation while inhibiting apoptosis and is aberrantly acti-
                                                                                        369–371
        B-Cell Receptor Signaling in Acute Lymphoblastic      vated in a range of human cancers.   In T-cell ALL, recent work
                                                              has  identified  a  very  high  frequency  of  mutational  activation  of
        Leukemia                                              oncogenic signaling through this pathway, most often via deletions
                                                              or truncating mutations of PTEN, but activating mutations of PI3K
        Despite its importance in the molecular pathogenesis of mature B-cell   and AKT genes also occur. 209,210,372,373  Moreover, deletions of PTEN
        lymphomas, the role of B-cell receptor signaling in ALL was poorly   have  been  found  to  predict  treatment  resistance  in  clinical  speci-
        understood. However, a recent study has revealed that 10%–15% of   mens. 40,209  Studies in zebrafish and patient-derived xenograft mouse
        cases of ALL are characterized by active signaling through the B-cell   models have identified that acquisition of the PI3K-AKT pathway
               353
        receptor.   Such  B-cell  receptor-positive  cases  were  identifiable  by   during clonal evolution of leukemic blasts leads to primary glucocor-
        expression  of  the  Ig  µ  heavy  chain  or  of  BCL6  protein  on  flow   ticoid resistance, an effect mediated by direct phosphorylation of the
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