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ChaPTEr 77  Immunotherapy of Cancer               1043


                                                                  IFNγ receptor, which initiates signaling through the Janus kinase/
           Resistance Mechanisms                                  signal transducer and activator of transcription (JAK/STAT)
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           Durable clinical responses with immune checkpoint therapy have   pathway to regulate gene expression.  Data from two independent
           been well documented; some of these responses last for years.   studies have established that the loss of genes involved in the
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           However, many patients do not respond to initial therapy or   IFNγ signaling pathway may lead to both primary  and adaptive
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           relapse  with  disease  after  initially  responding  to  treatment.   resistance  to immune checkpoint therapy.
           Resistance mechanisms may involve the following: (i) activation   Previously published data from a study in patients with bladder
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           of oncogenic pathways (WNT/B-catenin signaling, loss of PTEN   cancer demonstrated increased frequency of a CD4  ICOS  T-cell
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           expression), (ii) loss of interferon-gamma (IFNγ) signaling genes,   subset that produced IFNγ following anti-CTLA-4 therapy.  We
           (iii) recruitment of immunosuppressive cells such as Treg,   further hypothesized that tumor cells harboring mutations in
           myeloid-derived suppressor cells, M2 macrophages, and expression   the IFNγ-signaling pathway are not susceptible to the IFNγ
           of other inhibitory immune checkpoints, and (iv) composition   produced by these T cells, which may result in resistance to
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           of gut microbiome.                                     anti-CTLA-4 therapy.  Evaluation  of genomic  alterations  of
                                                                  IFNγ-pathway genes in melanoma patients treated with ipilim-
                                                                  umab demonstrated that the tumors of the nonresponders had
               KEY CONCEPTS                                       loss of IFNγ-pathway genes at significantly higher frequencies
            Mechanisms of Tumor Resistance to Immune-             compared with the responders.
            Mediated Therapy                                        Furthermore, mice bearing melanoma tumors with knockdown
                                                                  of IFNγ-receptor, resulted in impaired tumor rejection when
            •  Activation of oncogenic pathways                   treated with anti-CTLA-4 therapy.
            •  Loss of interferon-γ signaling genes in the tumor cells  Similarly, another study compared paired tumor biopsies that
            •  Recruitment of immunosuppressive cells (e.g., Treg cells, myeloid-
              derived suppressor cells)                           were collected from four melanoma patients before treatment
            •  Expression/secretion of inhibitory molecules       with anti-PD-1 (pembrolizumab) and at the time of disease
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            •  Composition of the gut microbiome                  relapse.  In two out of the four patients whose disease relapsed
                                                                  after initial responses to pembrolizumab therapy, mutations were
                                                                  detected in the genes encoding interferon-receptor–associated
           Activation of Oncogenic Pathways                       Janus kinase 1 (JAK1) or Janus kinase 2 (JAK2), two critical
           Recent research has identified an intricate interplay between   components of the IFNγ signaling pathway.
           oncogenic pathways and antitumor immunity.               Taken together, these findings indicate that the loss of IFNγ
             In  one  such  study,  the  whole  exome  sequencing  and  gene   signaling limits the effectiveness of the immune system to
           expression profiling of melanoma biopsies revealed that tumor-cell   eliminate tumor cells and induces resistance to immune check-
           intrinsic activation of the WNT/β-catenin pathway correlates with   point therapy.
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           absence of T cells in the tumor microenvironment.  Further
           investigation in a  genetically  engineered  autochthonous  mouse   Immunosuppressive Tumor Microenvironment
           melanoma model confirmed that increased oncogenic β-catenin   In addition to the above-mentioned genomic alterations in tumor
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           signaling results in a failure to recruit CD8α  and CD103  DC   cells, other resistance mechanisms within the tumor microen-
           populations  in  the  tumor  due  to  repressed  expression  of  the   vironment include Treg cells, myeloid-derived suppressor cells
           chemokine CCL4. Consequently, mice with tumors expressing active   (MDSCs), M2 macrophages, expression of other inhibitory immune
           β-catenin responded poorly to anti-CTLA-4 and anti-PD-L1 therapy,   checkpoints (TIM-3, LAG-3, VISTA), recruitment of inhibitory
           compared with mice with tumors lacking β-catenin expression. 70  molecules/ligands (indoleamine dioxygenase [IDO], carcinoem-
             Apart from the activation of active β-catenin, the loss of PTEN   bryonic antigen-related cell adhesion molecule 1 [CEACAM1],
           expression is a frequent event in melanoma, especially in tumors   PD-L1), and the secretion of inhibitory cytokines (IL-10, IL-35,
           with BRAF mutations. PTEN is a negative regulator of the PI3K-AKT   transforming growth factor [TGF]-β); these may have a direct
           pathway, and the complete loss of PTEN is associated with increased   negative effect on effector T-cell function and hence contribute
           signaling through this pathway, correlating with shorter OS in   toward immunosuppression and resistance to immunotherapy. 76,77
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           patients with advanced melanoma.  A recent study in a melanoma
           mouse model demonstrated that the loss of PTEN expression can   Gut Microbiome
           reduce the therapeutic activity of immune checkpoint therapy.   Two independent preclinical studies reported that the composition
           The study additionally demonstrated that a selective PI3K-β-isoform   of the gut microbiome can contribute to the difference in
           inhibitor could induce synergy with immune checkpoint therapy   responses to immunotherapy in cancer patients. 78,79
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           in the preclinical model.  Similarly, findings in human melanoma   One study compared the tumor growth in mice with distinct
           specimens confirmed that the loss of PTEN correlates with exclusion   gut microbiota and identified that mice that harbored the com-
           of CD8 T cell in the tumor and increased PI3K activation. Impor-  mensal  Bifidobacterium species had enhanced spontaneous
           tantly, patients with tumors lacking PTEN expression demonstrated   antitumor immunity compared with mice with a different gut
           poor clinical responses to anti-PD-1 therapy compared with patients   microbiota composition. Importantly, the direct administration
           with retained PTEN expression. 72                      of the Bifidobacterium species into mice with established mela-
                                                                  noma tumors improved tumor-specific immunity and response
           Loss of Interferon γ Signaling                         to anti-PD-L1 therapy. 78
           It is well established that IFNγ, a critical cytokine produced     Similarly, another study in tumor-bearing mice and cancer
           by T cells and other immune cells, plays a role in promoting   patients demonstrated that the efficacy of anti-CTLA4 therapy is
           innate  and  adaptive  immune  responses  and  in  inhibiting    associated with T-cell responses specific for the microbiota species
           tumor cell proliferation. IFNγ functions by binding to the    Bacteroides fragilis. The study reported that antibiotic-treated and
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