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 mebooksfree.com  mebooksfree.com           mebooksfree.com              cleaved to form the two envelope (surface) glycoproteins,   379   mebooksfree.com
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                                                                               CHAPTER 45  Human Immunodeficiency Virus
                                                      env
                                                  gp41
                                                                         gp120 and gp41.
                                                      Reverse
                                                                           Differences in the base sequence of the gp120 gene are
                                                      transcriptase
                                                                         used to subdivide HIV into subtypes called clades. Differ-
                                                                         ent clades are found in different areas of the world. For
                                                             env
                                                        gp120
                                                                         America.  Subtype  B  preferentially  infects  mononuclear
                                                        RNA
                                                                         cells and appears to be passed readily during anal sex,
                                                                         whereas subtype E preferentially infects female genital tract
                                                      p17 matrix         example, the B clade is the most common subtype in North
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 mebooksfree.com  mebooksfree.com           mebooksfree.com              (see Figure 45–2).                 mebooksfree.com                mebooksfree.com
                                                                         cells and appears to be passed readily during vaginal sex.
                                                      protein
                                                                           Three enzymes are located within the nucleocapsid of
                                                                         the virion: reverse transcriptase, integrase, and protease
                                                 Lipid bilayer
                               gag
                             p24
                                                                           Reverse transcriptase is the RNA-dependent DNA poly-
                    FIGURE 45–2
                                   Cross-section of human immunodeficiency virus
                                                                         merase that is the source of the family name retroviruses.
                    (HIV). In the interior, two molecules of viral RNA are shown associ-
                                                                         This enzyme transcribes the RNA genome into the proviral
                    ated with reverse transcriptase. Surrounding those structures is a
                                                                         DNA. Reverse transcriptase is a bifunctional enzyme; it
                    rectangular nucleocapsid composed of p24 proteins. Note that the
                                                                         also has ribonuclease H activity. Ribonuclease H degrades
                    viral protease and integrase are also located within the nucleocapsid
                                                                         RNA when it is in the form of an RNA–DNA hybrid mol-
                    (in addition to the reverse transcriptase), but, for lack of space, are
                    not shown in the figure. On the exterior are the two envelope pro-
                    teins, gp120 and gp41, which are embedded in the lipid bilayer
                                                                         essential step in the synthesis of the double-stranded provi-
                    derived from the cell membrane. (Reproduced with permission from Green
                                                                         ral DNA. Integrase, another important enzyme within the
                    WC. Mechanisms of disease: the molecular biology of human immunodeficiency   ecule. The degradation of the viral RNA genome is an
                                                                         virion, mediates the integration of the proviral DNA into
 mebooksfree.com  mebooksfree.com           mebooksfree.com              of transcription)  gene, which encodes a protein that             mebooksfree.com
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                    virus type I infection. NEJM. 1991;324[5]:309.)
                                                                         the host cell DNA. The viral protease cleaves the precursor
                                                                         polyproteins into functional viral polypeptides.
                                                                           One essential regulatory gene is the tat (transactivation
                        medically as it is the antigen in the initial serological test
                                                                                       1
                        that determines whether the patient has antibody to HIV
                                                                         enhances viral (and perhaps cellular) gene transcription.
                        (i.e., has been infected with HIV). (See “Laboratory Diag-
                                                                           The Tat protein and another HIV-encoded regulatory
                        nosis” section in this chapter.)
                                                                         protein called Nef repress the synthesis of class I major his-
                          The  pol gene encodes several proteins, including the
                                                                         tocompatibility complex (MHC) proteins, thereby reducing
                        virion “reverse transcriptase,” which synthesizes DNA by
                                                                         the ability of cytotoxic T cells to kill HIV-infected cells. The
                        using the genome RNA as a template, an integrase that
                        integrates the viral DNA into the cellular DNA, and a pro-
                                                                         late mRNA from the nucleus into the cytoplasm. The func-
                        tease that cleaves the various viral precursor proteins. The
                                                                         tion of the four accessory genes is described in Table 45–1.
                        env gene encodes gp160, a precursor glycoprotein that is   other essential regulatory gene, rev, controls the passage of
                                                                           The accessory protein Vif (viral  infectivity) enhances
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 mebooksfree.com  mebooksfree.com        POLH VIFTAT VPU  gp41  LTR  3'  APOBEC3G is “apolipoprotein B RNA-editing enzyme”                 mebooksfree.com
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                                                                         HIV infectivity by inhibiting the action of APOBEC3G, an
                                                                         enzyme that causes hypermutation in retroviral DNA.
                                          pol
                                                      env
                             gag
                                                                         that deaminates cytosines in both mRNA and retroviral
                            p24 *
                                                INT gp120
                       LTR
                                    PROT
                     5'
                                                                         DNA, thereby inactivating these molecules and reducing
                                                         REV NEF
                                                                         infectivity. APOBEC3G is considered to be an important
                    FIGURE 45–3
                                                                         member of the innate host defenses against retroviral infec-
                                   The genome of human immunodeficiency virus
                                                                         tion. HIV defends itself against this innate host defense by
                    (HIV). Above the line are the three genes for the main structural pro-
                                                                         producing  Vif,  which  counteracts  APOBEC3G,  thereby
                    teins: (1) gag encodes the internal group-specific antigens (e.g., p24);
                    (2) pol encodes proteins that have four enzymatic activities: protease
                    (PROT), polymerase that functions as a reverse transcriptase (POL),
                                                                           There are several important antigens of HIV:
                    RNase H (H), and integrase (INT); (3) env encodes the two envelope
                                                                           (1) gp120 and gp41 are the type-specific envelope gly-
                    glycoproteins, gp120 and gp41. Below the line are five regulatory   preventing hypermutation from occurring.
                                                                         coproteins. gp120 protrudes from the surface and interacts
                    proteins: viral infectivity factor (VIF), transactivating protein (TAT),
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 mebooksfree.com  mebooksfree.com           mebooksfree.com              1 the gene (i.e., other genes on the same proviral DNA or on cellular   mebooksfree.com
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                                                                         with the CD4 receptor (and a second protein, a chemokine
                    viral protein U (VPU), regulator of expression of virion protein (REV),
                    and negative regulatory factor (NEF). At both ends are long terminal
                    repeats (LTR), which are transcription initiation sites. Within the 5′ LTR
                    is the binding site for the TAT protein, called the transactivation
                                                                         Transactivation refers to activation of transcription of genes distant from
                    response element (TAR). TAT enhances the initiation and elongation
                    of viral mRNA transcription. (*p24 and other smaller proteins such as
                                                                         DNA). One site of action of the Tat protein is the long terminal repeat at
                                                                         the 5′ end of the viral genome.
                    p17 and p7 are encoded by the gag gene.)
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