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1384   Part VII  Hematologic Malignancies


        t(4;14). The reasons for this strong association are so far unknown.   this region is associated with a poor outcome; however, further studies
        Both  FGFR3  and  MMSET  are  potential  therapeutic  targets,  and   are required in order to ascertain the clear prognostic impact of 1q
        several tyrosine kinase inhibitors are currently being tested in order   gains. A number of important genes in addition to CKSB are located
        to inhibit FGFR3 function.                            in this region, including the interleukin 6 (IL-6) receptor. 3
           The  t(14;16)(q32;q23)  involves  the c-MAF  gene  located  at  the
        16q23 breakpoint. c-Maf is a basic zipper transcription factor that
        positively regulates cyclin D2 and ITGB7 (Table 86.2). Although this   GENOMICS
        translocation  is  reported  in  only  5%  of  patients  with  MM,  it  is
        observed in 25% of MM cell lines, suggesting its role in cell prolifera-  Expression Profiling
        tion as well as its association with aggressive behavior of the disease.
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        t(14;16) is considered to be associated with poor prognosis. The other   Several investigators have performed expression profiling of CD138
        translocation partner of 14q32 is 20q11, observed in less than 5%   myeloma  cells  using  high-density  microarrays  in  order  to  better
        patients. It dysregulates MAFB expression, another basic transcrip-  understand the pathobiology of myeloma, develop prognostic models,
        tion factor belonging to the MAF family, and it has as yet unclear   identify new targets for drug development, and develop personalized
        molecular consequences. It is also considered to be associated with a   medicine approaches. These studies have identified sequential genetic
        poor outcome; however, studies have been very small because of its   changes from normal plasma cells to plasma cells from patients with
        infrequent occurrence.                                MGUS and MM, and they have provided clues to the molecular basis
           Although c-Myc is increasingly being considered to play a role in   for malignant transformation and potential therapeutic targets.
        myeloma  pathobiology,  t(8;14)  translocations  involving  c-Myc  are   Expression profiling in combination with cytogenetic changes has
        rare, unlike Burkitt lymphoma, where it is considered a classic feature.   been used to classify myeloma in order both to identify phenotypic
        Almost 20% of patients with 14q32 translocation have other partners   and molecular subgroups as well as to develop a prognostic scoring
        with unclear clinical or molecular significance.      system.  The  molecular  classification  compared  profiles  from  MM
                                                              cells with those from MGUS representing an initial indolent form of
                                                              the disease and MM cell lines representing cells with a more aggres-
        Deletion 17p                                          sive phenotype. A later, more detailed classification identified differ-
                                                              ent subgroups, based mainly on cyclin D gene expression and on the
        Loss of the short arm of chromosome 17 [del(17p)] has been described   different 14q32 translocations. This molecular classification, refined
        in about 10% of patients with early-stage MM. The deletion involves   in 2006, identified seven subclasses of myeloma. In this model, the
        the major part of the short arm of chromosome 17 with consequent   first class was defined by the translocation t(4;14) and was identified
        loss of a number of genes, including p53 (Table 86.2). However, p53   by overexpression of the MMSET and/or FGFR3 genes. The second
        abnormalities  represent  an  important  late  event,  mostly  acquired   class was related to the translocation t(14;16) or t(14;20) and was
        during  evolution  and  associated  with  progression  to  an  aggressive   defined  by  upregulation  of  one  of  the  MAF  genes.  Cases  with
        form of the disease. A study of p53 gene mutations in 52 patients   CCND1  or  CCND3  upregulation  [owing  to  the  translocations
        with myeloma showed that 7 of 52 patients had p53 abnormalities,   t(11;14) or t(6;14)] clustered in two different classes, CD1 (class 3)
        all  with  an  advanced,  clinically  aggressive  acute/leukemic  stage  of   and  CD2  (class  4). The  CD2  group  was  characterized  by  CD20
        MM. Patients presenting with del(17p) have a poor prognosis, despite   expression. The fifth group was characterized by hyperdiploidy. The
        the use of novel agent combinations or HDT and transplant. Muta-  last two groups were characterized by a low incidence of bone disease,
        tions of the TP53 gene are uncommon events in myeloma, especially   according  to  low  Dickkopf-related  protein  1  (DKK1)  expression,
        at diagnosis. 3                                       whereas the last group was characterized by increased expression of
                                                              genes involved in proliferation. This molecular classification has been
                                                              further  modified  by  the  Dutch-Belgian  Hemato-Oncology  Group
        Deletion 13q14                                        (HOVON)  group.  This  analysis  did  not  confirm  the  “low  bone
                                                              disease” group, but three other subgroups were identified: one group
        Deletion of chromosome 13 or part of its long arm is detected in   characterized by overexpression of cancer testis antigen genes, another
        approximately 15% to 20% of the patients by conventional cytoge-  group defined by overexpression of positive regulators of the nuclear
        netics and by interphase FISH in 50% of the patients. Interestingly,   factor-κB  (NFκB)  pathway,  and  a  third  subgroup  enriched  for
                                                                                          5
        del(13q) is also detected in 50% of patients with MGUS by FISH,   “myeloid” genes (unclear significance).  Various prognostic signatures
        predominantly in a small subpopulation of cells, indicating that it is   have  also  been  developed  using  these  expression  profile  data  to
        a  secondary  genetic  event  occurring  after  initial  clonal  expansion.   identify  high-risk  disease.  RNA  sequencing  is  now  replacing
        Although the retinoblastoma gene is present in the deleted region,   microarray-based expression profiling, providing additional genomic
        the exact molecular consequence of del(13q) has not yet been ascer-  correlates including transcriptome modifiers and splicing.
        tained. A number of studies, especially with conventional agents as
        well as HDT, have identified del (13q) to be a poor prognostic feature
        in myeloma; however, recent studies have identified that there is an   Copy Number Alteration
        association between del (13q) and t(4;14), and in absence of t(4;14),
        del(13q) by itself is not associated with a poor prognosis, especially   DNA-based high-throughput techniques such as array comparative
                             3
        with the use of novel agents.  However, del(13q) detected by conven-  genomic  hybridization  (CGH)  and  high-density  single-nucleotide
        tional  cytogenetics  is  still  considered  a  poor  prognostic  feature.   polymorphism (SNP) arrays have identified recurrent copy number
        Interestingly, del(13q) is also common in chronic lymphocytic leu-  alterations (CNAs). These studies have identified significant molecu-
                                                                                    6
        kemia but does not confer an adverse prognosis.       lar heterogeneity (Fig. 86.2).  CNAs have been observed in 98% of
                                                              192 newly diagnosed patients with MM. Two distinct groups were
                                                              observed. One group of patients showed a hyperdiploid phenotype
        Abnormalities of the 1q Region                        with gains of chromosomes 3, 5, 7, 9, 11, 15, 18, 19, and 21 and/
                                                              or loss of chromosomes 13, 22, and X (in female cases). The second
        Recent studies have reported the biologic role and prognostic implica-  group  is  characterized  by  gain  or  loss  of  subchromosomal  region.
        tions  of  a  gain  of  1q.  In  fact,  this  is  one  of  the  most  frequently   These include deletion of 1p, 6q, 8p, 12p, 14q, 16p, 16q, and 20p
        reported cytogenetic abnormalities in MM, being described in about   as well as amplification of 1q and 6p. The genomic heterogeneity
        one-third of the patients. This abnormality has also been reported in   observed within the hyperdiploid group is driven by the presence of
        a number of other hematologic and solid tumors. A gain of the 1q21   either  gain  of  copies  of  chromosome  1q  and/or  chromosome  11,
        chromosomal region or overexpression of the CKS1B gene located in   chromosome  13  loss,  or  chromosome  5  gain.  Subclasses  of
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