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CHaPter 6  Overview of T-Cell Recognition              103


           encounter, for example, skin, mucosae, and lungs. Here, they are   through recognition of the target cell synthesizing the viral or
           able to receive molecular signals from pathogens that both activate   tumor antigen. This cytosolic cross-presenting route requires that
           the DCs and promote internalization and processing of antigens.   internalized or phagocytosed proteins from pathogen-infected
           These pathogen-derived signals initiate DC mobilization, exit   or transformed cells gain access to the cytosol. A mechanism
           from the tissue, and transit to secondary lymphoid organs. Other   that allows transport of an intact or partially unfolded/degraded
           subsets of DCs are  resident cells within the lymph node and   protein from the lumen of lysosomal compartments into the
           encounter antigens delivered either via the lymphatics or by   cytosol is therefore needed. Export has been speculated to involve
           other cell types that transit from the site of antigen encounter   a transmembrane channel or a direct extraction mechanism.
           to the lymphoid tissue.                                Proteins, such as those involved in ER-associated degradation
             DCs gain access to secondary lymphoid tissue through expres-  (ERAD), have been implicated by many studies, as has the Sec61
           sion of chemokine receptors and become localized to regions   translocon. Cross-presentation has also been shown to require
           that allow encounter with recirculating T cells that enter the   an endosomal, pH-dependent reductase (GILT), suggesting that
           lymphoid tissue to survey potential antigen-bearing cells. DCs   protein unfolding may be needed for antigenic protein transfer.
           also express key costimulatory molecules, such as CD80 and   After crossing the lysosomal membrane, the cytosolically
           CD86, and cytokines, such as IL-12, which are essential to prime   localized  proteins  can  now  enter  the  classical  or  endogenous
           naïve T cells for expansion and differentiation into the effector   pathway of class I–restricted presentation: proteolysis by the
           cells (Chapter 12).                                    proteasome, import of the derived peptides into the ER via TAP,
             The intracellular events associated with antigen acquisition   and peptide binding being facilitated/edited by the components
           and presentation by DCs is easy to envision for CD4 T cells   of PLC. The peptide class I complex would then be exported
           because the antigens that need to access class II molecules can   from the ER to the cell surface via the typical default secretory
           become internalized into the key endosomal compartments. For   pathway (Fig. 6.9).
           MHC  class I–restricted  antigen  presentation,  particularly  for   The vacuolar pathway provides as an alternative means for
           responses to pathogens that do not infect DCs or become systemic,   cross-presentation. In this pathway, the internalized pathogen
           and for responses to tumors that are sequestered in distant sites   or tumor-derived proteins remain in the endosomal compart-
           in the body, this exogenous presentation poses a challenge because   ments, where they are degraded by lysosomal proteases. Class I
           the site of peptide binding to class I is in the ER, generally not   molecules at the cell surface then encounter the antigens during
           thought to be readily accessible to internalized proteins.  internalization and recycling. Some evidence also suggests
             In the last decades, an auxiliary pathway of antigen presenta-  that components of the ER-associated PLC may localize to the
           tion, termed cross-presentation, has been discovered. This antigen   endosomal compartments and intersect with MHC class I,
           presentation event for CD8 T-cell priming to exogenous antigens   allowing assembly of the complex within these compartments
           involves  uptake  and  class  I–restricted  presentation  of  cell-  by a similar mechanism as in the ER. Under what conditions,
           associated antigens from tumors or virus-infected cells, and those   within what cells  in vivo, and with what antigens these two
           associated with intracellular bacteria pathogens, such as listeria   potential pathways of exogenous presentation are operational
           or fungal pathogens whose proteins are not synthesized within   remain to be defined.
           the APC. Cross-presentation also serves to prime CD8 T cells   Both pathways of cross-presentation require that the internal-
           reactive with pathogen-derived proteins and aggregates released   ized antigen be protected from rapid and terminal degradation.
           by infected cells in distal sites, such as the respiratory tract. 37,38  Alkalization of the compartment diminishes recruitment of
             Internalization of cell- or pathogen-associated antigens into   enzymes responsible for acidification of lysosomal compart-
           endosomal/lysosomal compartments through phagocytosis or   ments, such as nicotinamide adenine dinucleotide phosphate
           receptor-mediated uptake initiates cross-presentation and ulti-  (NADPH) oxidase 2 (NOX-2). Most of the lysosomal enzymes
           mately leads cell-surface presentation of the pathogen-derived   are pH dependent and require acidic pH for optimal activity.
           peptides in association with class I molecules, leading to CD8   Strategies to modify this acidification, either by genetic means
           T-cell activation, cell division, and differentiation. These primed   or by pharmacological approaches, have been shown to promote
           CD8 T cells ultimately become programmed to deliver their   cross-presentation.
           effector function, most commonly cytolysis, on either pathogen-
           infected cells or transformed cells, eliminating them from the host.  THE MHC-PRESENTED PEPTIDOME
             The intervening, intracellular events involved in cross-
           presentation are the subject of active research. Early studies   Isolation and sequencing of host peptides constitutively bound
           pointed to the possibility that this presentation occurs in only   and presented by MHC molecules has yielded significant new
           a subset of DCs, now known to be distinguished by markers,   insight regarding the diversity, abundance, and source of peptides
                                       +
                      +
           such as CD8α  in mice and BDCA3  cells in humans. Ablation   that are normally displayed. 39,40  The key technical advance was
           of DCs  in vivo eliminates cross-presentation of pathogen-  the development and use of tandem mass spectroscopy to
                                                                                                41
           associated antigens, emphasizing the need for this cell type for   sequence very low abundance peptides.  In this approach, MHC
           efficient cross-priming.                               class I or class II molecules of interest are isolated by antibody
             There are a number of studies that suggest that cross-  affinity chromatography. The bound peptides are then eluted,
           presentation is dependent on TAP and the proteasome because   and the low-molecular-weight material, including peptides, are
           in many cases, presentation of the epitope is sensitive to inhibi-  separated from antibody and class I and then subjected to
           tors of these proteins. Because of the shared cellular cofactors   sequencing.
           involved in peptide generation and loading, it is envisioned   From these studies, it is now estimated that as many as 10,000
           that the same peptides would be presented by the endogenous   different self peptides are in association with a given class II
           and the cross-presentation route. This conclusion would seem   molecule on the cell surface. For human APCs that can express
           to be most beneficial to effective surveillance and protection   6–10 different class II species (HLA-DR, HLA-DQ, and HLA-DP
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