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CHaPter 6  Overview of T-Cell Recognition                99



           Class II Peptide Loading                               HLA-DM and Peptide Exchange
           The precise intracellular compartment where class II peptide   HLA-DM (DM) is the critical mediator in the release of CLIP
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           loading occurs has been a subject of much investigation.    from class II and its replacement with peptide. 22-26  HLA-DM α
           Endosomal vesicles “mature” over time, becoming more acidic   and β heterodimers are encoded within the HLA gene complex.
           as they progress toward an end-stage lysosome. MHC class II   Instead of associating with invariant chain, HLA-DM gains access
           molecules change conformation with acidic pH, becoming more   to endosomal compartments via a tyrosine-based motif in its
           “peptide receptive.” Also, as pH decreases, endosomal proteolytic   cytosolic tail that allows rapid internalization into endosomal
           enzymes generally become more active. Some resident endosomal   compartments after a brief cell-surface intermediate. The release
           proteases are synthesized as inactive enzymes, termed zymogens,   of CLIP from MHC class II molecules (the dissociation reaction)
           which become activated either directly by pH-dependent con-  and the acquisition of antigenic peptide (the binding reaction)
           formational  changes  or  by cleavage  of  other  endosomal pH   are greatly enhanced by the presence of DM. Both dissociation
           dependent proteases. In most APCs, late endosomal compartments   and binding are greatly affected by acidic pH.  At acidic pH,
           are enriched in serine proteases (cathepsins A and G), aspartic   interactions between DM and class II are initiated along their
           proteases (cathepsins D and E), and cysteine cathepsins (cathepsins   lateral faces on the side of class II that bears the amino terminal
           S and L). The low pH in late endosomes promotes antigen   segment of peptide.
           unfolding and access to reductases, such as the IFN-γ–inducible   DM prefers class II molecules that are open and have
           thiolreductase (GILT) that cleaves disulfide bonds. The combina-  unstable interactions with peptide. DM is thought to bind and
           tion of low pH and reduction of disulfide bonds thus facilitates   stabilize this open intermediate of class II–peptide complexes
           protein unfolding, proteolytic digestion, and generation of   that is promoted by low pH. This accelerates peptide release.
           antigenic peptide fragments.                           This  same  open  conformation  is  apparently  also  readily  able
             Although  MHC  class  II  molecules  traffic  through  many   to capture peptide, promoting a rapid exchange of CLIP for
           endosomal compartments, they are most highly enriched in   antigenic peptides. When a stable interaction between class II and
           late endosomes that have a pH of approximately 4–5. These   antigenic peptide forms and the antigenic peptide is fully docked
           heterogeneous intracellular compartments are termed  MIICs   within the MHC class II molecule, DM is released from class II
           (MHC class II compartments) or MVBs (multivesicular bodies)   molecules. MHC class II–peptide complexes can then escape to
           and can have either multilamellar or multivesicular organization,   the cell surface for recruitment of CD4 T cells. Accordingly, DM
           consisting of both a limiting membrane and internal membranes.   acts as a catalyst of peptide exchange for class II, binding to a
           In these compartments, class II molecules localize with the   transition state until the final product (MHC-class II–peptide) is
           other critical components of the antigen presentation pathway.   formed.
           The precise organization of the class II–containing compart-
           ment likely varies with the APC studied (B cells, macrophages,   Selection of Immunodominant Peptides
           or DCs) and can change upon signaling or antigen receptor     Of the many potential peptides that can bind to class II molecules
           engagement.                                            and recruit CD4 T cells when introduced into the host as single
             The exchange reaction of the invariant chain fragment for   peptides, only a subset of these epitopes recruit CD4 T cells
           antigenic peptides represents an intriguing biochemical event   when the host encounters an intact antigen or pathogen. For
           that derives from many factors of MHC class II structure and   example, in a 50-kDa protein that has more than 80 potential
           biology. The first is the polymorphic nature of the peptide-binding   15–18mer peptides, the CD4 T cells may focus on just 3–5 peptide
           pocket of the class II heterodimer. Much of the genetic variability   epitopes. These peptides are termed immunodominant. Another
           in both α and β chains lies within the peptide-binding cleft of   subset of peptides is capable of recruiting CD4 T cells in the
           class II molecules. This highly localized genetic polymorphism   host when introduced as single peptides. These are termed cryptic
           is thought to allow alternate MHC molecules expressed in different   because they are sequestered from the immune responses to
           individuals to capture distinct subsets of peptides from pathogenic   complex protein antigens. Other peptides can neither bind to
           organisms.                                             the host class II nor recruit CD4 T cells.
             All allelic forms of class II thus must be able to accom-  Early models to explain the selectivity of CD4 T-cell responses
           modate the CLIP segment while they are associated with     suggested that intracellular antigen proteolysis would play a
           an intact invariant chain. This ensures conformational integrity    prominent role in selection of epitopes because intact antigens,
           of the class II molecule early in biosynthesis. Once invariant    but not peptides, require internalization and degradation. By
           chain is proteolytically cleaved, the various allelic forms of   this model, the position of the peptide within the three-
           class II are differentially able to sustain interactions with     dimensional structure of antigenic proteins might limit access
           CLIP and acquire peptides. Class II molecules with high affin-  to proteolytic enzymes and thus availability to bind to class II
           ity for CLIP require an efficient mechanism to release CLIP.     molecules. Conversely excessive degradation, leading to destruc-
           Class II molecules devoid of peptide have a tendency to    tion of the peptide epitopes by endosomal proteases, could lead
           aggregate and become degraded, particularly at the low pH of   to diminished yield of some peptides for class II binding and
           the endosome. Peptide binding to class II molecules, even at low   presentation. These differential proteolytic events could thus
           pH where peptide acquisition is facilitated, is quite slow. These   restrict the potential presented repertoire to a limited number
           combined characteristics of class II structure and biochemistry   of peptides of the appropriate size (typically 12–25 amino acids).
           led to the early speculation that there must be a mechanism   Although it is likely that in some cases such differential antigen
           to ensure the release of CLIP from all alleles of class II and   processing might impact the yield of available peptide, accumu-
           rapid subsequent binding of antigenic peptide. The protein that   lated data now suggest that selective presentation of potential
           facilitates this process is termed HLA-DM (in humans) or H-2M   antigenic peptides in association with MHC class II molecules
           (in mice).                                             is primarily as a result of intracellular DM editing.
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