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212          Part One  Principles of Immune Response


           Several factors produced or induced by gut microbes have   The increasing incidence of autoimmune disease in industrial-
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        been shown to be essential for microbiota-dependent Treg   ized countries has been linked to use of antibiotics,  improved
        accumulation, particularly in the colonic lamina propria. The   sanitation, and consumption of processed foods rich in fat and
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        capsular polysaccharide A (PSA) moiety of Bacteroides fragilis,   carbohydrates but negligibly low in fiber.  These practices limit
        which mediates the interaction between the bacterium and the   microbiota diversity and deplete the bacteria that “educate” the
        colonic mucosa, can also act via the TLR–MyD88 pathway to   developing immune system, leaving it prone to overreaction to
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        promote expansion of IL-10–producing colonic Tregs.  Clostridial   subsequent challenges.
        strains stimulate production of TGF-β by intestinal immune   There are several observational, clinical, and epidemiological
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        cells. This, in turn, enhances Foxp3  Treg induction. Clostridia   reports, supported by a growing body of experimental findings
        are also very adept at anaerobic fermentation of indigestible   in support of this concept. For example, vancomycin treatment
        fiber.  Thus  their  production  of  butyrate  might  be  another   in young mice increases their susceptibility to asthma as well as
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        mechanism whereby they can enhance accumulation of Foxp3    food allergy, in large part as a result of depletion of clostridial
        Tregs in the colonic lamina propria. 19                strains known to promote colonic Treg induction and expansion.
                                                               Early life treatment with low-dose antibiotics results in increased
        CD4 T-Helper Cells                                     risk susceptibility to obesity and corresponding alterations in
        In the intestines of both mice and humans, both IFN-γ–producing   immune gene expression in the ileum. Individuals who had
        Th1 and T-helper “IL-17–producing” (Th17) cells are present   limited sanitary amenities during childhood or were raised around
        (Chapter 16). Although detectable even at steady state, these   livestock are at reduced risk of developing IBD (Chapter 75)
        populations, reactive to microbial antigens, are largely held in   during adulthood. This latter phenomenon is commonly attrib-
        check by the intestinal immunoregulatory system. In some cases,   uted to the acquisition of a diverse microbiota in these microbially
        expression of the Th cell signature (transcription factors and   enriched environments. However, such living conditions also
        cytokines) of distinct lineages can overlap with each other or   pose an increased risk of parasitic helminth infection. This concept
        with the Treg transcription factor Foxp3, denoting either a common   is supported by experimental data showing that treatment with
        progenitor or the dynamic lineage transitions that can ensue in   Trichuris muris prevents development of experimental colitis in
        response to competing immune signals. In the absence of regulatory   mice deficient for the IBD-related gene Nod2.
        pathways, for example, in IL-10 deficiency, the numbers and
        frequencies increase gradually, coincident with the onset of chronic   IMMUNE SYSTEM—MICROBIOTA CROSS-TALK IN
        inflammation. The same is true during GI infection (see below),   INTESTINAL INFLAMMATION
        where the ability of invasive bacteria or viruses to enter a cell,
        or the physical interaction of the bacteria with the intestinal   The immune system and the microbiota are in constant dialogue
        epithelium, culminates in induction and expansion of Th1 and   at steady state. Throughout an individual’s life, the microbiota
        Th17 cells, respectively, in the intestinal lamina propria.  undergoes  transient  shifts  in  response  to  external  influences.
                                                               These include infections; medications, such as antibiotics; and
        Mucosal B Cells                                        dietary changes. The timing, magnitude, and targets of these
        With increasing colonization comes an increased likelihood of   perturbations can result in immune responses aimed at resetting
        epithelial breach, particularly by bacteria capable of penetrating   this balance or limiting host collateral damage. Furthermore,
        the inner mucus layer and gain access to the intestinal epithelium.   feces of patients with certain extraintestinal chronic inflammatory
        By intercalating dendrites between epithelial cells and into the   diseases also display reduced microbial abundance and diversity
        lumen, DCs in the intestinal lamina propria are able to sample   relative to their healthy counterparts. This may reflect the role
        the luminal bacteria. These antigen-loaded DCs migrate to the   of the intestinal microbiota in the etiology of diseases, the impact
        mesenteric lymph nodes, where they interact with B and T cells   of tissue-specific inflammation on the microbiota, or both.
        to induce B-cell production of anticommensal IgA. These IgA-
        producing plasma cells migrate to the intestinal lamina propria,   Gastrointestinal Infection
        where they secrete IgA dimers that migrate across the epithelium   The microbiota helps provide resistance to pathogenic invasion
        and  into  the  lumen.  There  they  bind  commensals  and  thus    at mucosal sites. This can occur either indirectly by enhancing
        limit their translocation. In germ-free mice, the absence of the   barrier defenses through various immune and nonimmune
        microbiota and resultant absence of IgA production is seemingly   mechanisms or directly by competing with harmful microbes.
        replaced by IgE class switching (Chapter 4) in mucosal lymphoid   Nevertheless, several organisms still manage to breach these
        tissues and a corresponding increase in susceptibility to oral   defenses. Such pathogen invasion induces production of proinflam-
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        antigen-induced systemic anaphylaxis.  Therefore the microbiota   matory cytokines by innate cells that can appropriately expand
        itself helps limit hyperreactivity to allergens and parasite challenge   the magnitude of the immune response by signaling the differentia-
        throughout an individual’s life.                       tion of Th cells. The soluble products of these cells recruit other
                                                               immune cells and collectively aid in pathogen eradication and
        IMMUNE CONSEQUENCES OF EARLY                           sometimes in repairing any physical damage to the intestinal
        MICROBIAL MANIPULATION                                 barrier. Unimpeded inflammatory responses can be destructive
                                                               to host tissue, and thus immunosuppressive mechanisms are
        Because  the  microbiota  is  so  essential  to  the  early  postnatal   induced that help to restore immune homeostasis.
        maturation of the immune system, the consequences of manipula-  In a healthy host, GI infections are largely self-limiting.
        tion or insufficiency of the microbiota can impact host immunity   However the temporary disruption of microbial homeostasis
        throughout life. Microbial disruption, particularly during the   (dysbiosis) can have lasting effects on host health. In the cases
        neonatal–infancy period, is being associated with increased risk   of Salmonella enterica serovar typhimurium (S. typhimurium)
        of autoimmunity and chronic inflammation later in life.  and E. coli infection in mice, the associated inflammation can
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