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                                                                                     Innate Immunity



                                                                                  Douglas R. McDonald, Ofer Levy






           Innate immunity is the first line of host defense against infection.    KEY CONCEPTS
           All living organisms are continually exposed to microbes. For
           example, the human gut is colonized by trillions of commensal   The Innate Immune System
           bacteria. The innate immune system must accommodate com-  •  The innate immune system provides the initial immune response to
           mensal bacteria but be able to be activated by pathogens (e.g.,   pathogens.
           Salmonella  or  Shigella).  Potentially  life-threatening  infections   •  Although less specific than the adaptive immune system, the innate
           can result from naturally occurring defects in the innate immune   immune system must differentiate commensal from pathological
           response (Chapter 36).                                    microbes.
             A defining characteristic of innate immunity is its existence   •  The innate immune system comprises barriers to the environment
           before microbial exposure. Innate immune responses are initiated   (e.g., skin, mucosa), antimicrobial peptides and proteins, cells (e.g.,
                                                                     neutrophils, macrophages, monocytes), and soluble factors (i.e.,
           rapidly by microbes and precede the development of adaptive   cytokines, chemokines, complement).
           immune responses. The adaptive immune system is characterized   •  Pathogen detection is mediated by a variety of germline-encoded
           by the tremendous diversity of its receptors and its antigen ligands.   pathogen recognition receptors (PRRs) that can recognize invariant
           The innate immune system responds to a more constrained set   microbial structures known as pathogen-associated molecular patterns
           of antigens that are typically essential and invariant structural   (PAMPs).
           components specific to microbes. These microbial components   •  Activation of the innate immune system leads to subsequent activation
                                                                     of the adaptive immune system.
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           are known as pathogen-associated molecular patterns (PAMPs).    •  The innate immune system has a form of memory or “trained immunity”
           They include microbial cell wall components and nucleic acids.   such that innate immune activation can modulate innate immune
           PAMPs are recognized by pattern recognition receptors (PRRs),   responses to subsequent unrelated stimulus/infection.
           and they are highly potent and effective in initiating inflammatory
           responses.
             “Trained immunity” is used to describe the phenomenon of
           enhanced innate immune responses following microbial expo-
              2,3
           sure.  This increase in host resistance to reinfection can provide   responses to infection. Genetic disorders of the skin that com-
           “cross-protection” against other infectious agents. For example,   promise skin integrity, such as epidermolysis bullosa (Chapter
           macrophages and natural killer (NK) cells can expand and contract   63), can result in life-threatening infections.
           their cell populations, upregulate genes involved in pathogen   Skin disorders that impair barrier function, such as atopic
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           recognition and presentation, and secrete cytokines that augment   dermatitis (AD) (Chapter 44) or eczema, are common.  Filaggrin
           the antimicrobial activity of bystander cells. Thus there is a   (FLG) is a key a structural component of the outermost layer
           growing appreciation that the adaptive and innate immune   of the epidermis. Loss of function variants in filaggrin (R510X,
           systems have certain similar characteristics.          2282del4) is estimated to be present in up to 50% of patients
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                                                                  with AD.  FLG mutations are a risk factor for the development
           BARRIERS TO INFECTION                                  of early-onset AD and thus for sensitization to food allergens
                                                                  (Chapter 45), allergic rhinitis, and asthma (Chapter 72) (the
           Skin and Mucosa                                        atopic march). Eczematous skin can lead to reduced expression
           The epithelial layers of the skin and the linings of the gastro-  of APPs and increased susceptibility to cutaneous bacterial (e.g.,
           intestinal (GI), genitourinary (GU), and respiratory tracts provide   Staphylococcus, Streptococcus) and viral (e.g., herpes) infections. 5
           a mechanical barrier to microbial entry and thus play an essential   The luminal surfaces of the intestines are sites of continual
           role in host defense. The stratum corneum of the skin is the first   exposure to massive numbers of microbes. Intestinal epithelial
           barrier encountered by microbes (Chapter 19). The skin is   cells (IECs) (Chapter 20) protect against infection by forming
           persistently colonized with numerous microbes. Thus an intact   a  physical barrier  through  tight  junctions and  by producing
           physical barrier is essential to prevent activation of the immune   mucus (goblet cells) and  APPs. IECs express apical junction
           system under nonpathological conditions. Key cellular compo-  complexes, including E-cadherin, ZO-1, claudin, and occludin,
           nents of the skin immune barrier include keratinocytes, dendritic   which function to form a tight monolayer that prevents penetra-
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           cells (DCs), macrophages, T lymphocytes, and mast cells. These   tion by bacteria.  A breakdown in epithelial gut homeostasis can
           cells express a wide variety of pathogen recognition receptors   lead to inflammatory bowel diseases (e.g., Crohn disease, ulcerative
           and secrete a broad range of cytokines, chemokines, and anti-  colitis) (Chapter 75) and increased susceptibility to bacterial
           microbial proteins and peptides (APPs) that mediate inflammatory   infection. 7

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