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CHAPtER 5  The Major Histocompatibility Complex                  85



               KEY CoNCEPtS                                       an effective immune response to the particular pathogen.
            Function of the Human Leukocyte Antigen               Moreover, selection also operates on the pathogen, encouraging
                                                                  peptide variation. Variation in peptides drawn from common
            (HLA) Molecules                                       pathogens and the introduction of novel pathogens with novel
            •  The HLA molecule is a receptor that binds a peptide. The peptide–HLA   peptides result in pressure on the species to create variation in
              complex is a ligand that binds to the clonotypic T-cell receptor (TCR).   HLA molecules among individual members of that species. The
              The trimolecular Peptide–HLA–TCR  complex triggers the activation   remarkably different frequency of the HLA alleles in different
              and proliferation of the T cell in an adaptive immune response.  ethnic subsets tells the history of the successful adaptation of
              •  HLA class I A, B, and C molecules are expressed on the surface   our ancestors’ adaptive immune systems to a new environment
                of virtually all nucleated cells.                 with different pathogens, as well as bottlenecks resulting from
              •  HLA class II DQ, DR, and DP molecules are constitutively expressed
                on B cells, professional antigen-presenting cells (APCs), thymic   migration and perhaps survival during periods of massive
                epithelial cells, and activated T cells.          epidemics.
            •  The  immunological self is the set of self peptides and self HLA   The evolutionary consequence of the diversification of genes
              molecules that select the TCR repertoire in the thymus and that   encoding HLA molecules is seen at two levels. The first is at the
              constitute the T-cell recognition component of an individual’s adaptive   level of the individual and is characterized by the presence of
              immune system.                                      different HLA class I and class II loci, each of which codes for
            •  Nonself peptide–HLA complexes are recognized by T cells during an   one or two different peptide-presenting HLA molecules for each
              adaptive immune response, and they become activated to either initiate
              an immune response (CD4 helper T cells) or recognize a target (CD8   locus. The second is at the level of the population and is evidenced
              cytotoxic T cells).                                 by the development of a very large number of alleles at each
            •  Through thymic selection, the TCR can adapt to recognize a very large   locus, with each allele coding for alternative polymorphic gene
              variety of peptide–HLA structures.                  forms and thus for various peptide-presenting allotypes, each
              •  Because of the plasticity of this recognition, genes encoding the   of which has the potential to bind a different set of peptides.
                HLA molecules are free to evolve a large number of genes encoding   Duplication of HLA genes involved in peptide presentation is a
                duplicated or alternative peptide-presenting molecules with specificity
                to bind different peptides.                       genetic strategy that increases the range of peptide-presenting
              •  The diversification of peptide-presenting structures fosters the   structures available to the individual, thus enhancing the variety
                development of different T-cell repertoires with completely different   of presented peptides that can be recognized and bound. 8
                recognition properties. This thwarts the possibility that a pathogen
                will be able to evolve a way to bypass recognition.
                                                                      KEY CoNCEPtS
                                                                   The Biological Significance of Polymorphisms:
           GENERATION AND SELECTION OF                             Why so Many?
           POLYMORPHISMS: BIOLOGICAL CONSEQUENCES                  •  Human leukocyte antigen (HLA) class I and class II genes are extremely
                                                                     polymorphic.
           The hallmark of the classic HLA molecules, both class I and   •  Each HLA allele encodes molecules with different peptide-binding
           class II, is their extensive polymorphism. HLA polymorphism   properties that influence the particular peptides recognized by the
           observed in different human populations is far greater than any   T cells.
           other polymorphism observed in any other part of the human   •  The sequence of the HLA gene thereby determines the peptide
           genome. This is a direct reflection of their role in the immune   recognition features of the adaptive immune response.
           response. Pathogens characterized by different proteins and   •  HLA allelic polymorphisms are maintained by frequency-dependent
           peptides, either in different epidemics or endemic to regions,   selection, where the fitness of an individual bearing a novel allele
           account for much of the evolutionary drive responsible for the   increases  because it  can respond more  effectively  to certain
                                                                     pathogens.
           large number of alternative gene forms and their regional diversity   •  The multiple loci and numerous alleles per locus serve both the fitness
           across the human race. An individual with an adaptive immune   of an individual and the survival of the species.
           system based on HLA molecules that effectively bind peptides   •  The polymorphism of the HLA system reflects the environmental/
           derived from common pathogens is much more likely to have   pathogen challenges to which a particular population has been
           an effective response against that common pathogen. This results   exposed over evolutionary time.
           in selection of individuals with a particular allele, encoded by
           an HLA gene.
             Genetic polymorphism implies that alleles of a gene are present   HLAS IN INFECTIONS, TRANSPLANTATION,
           at a frequency greater than expected from random mutation as   AUTOIMMUNITY, AND CANCER
           a result of selection for diversity. In the case of the HLA genes,
           there is no preponderant wild-type allele, which would be an   HLA in Infections
           example of balancing selection. Instead, virtually all alleles qualify   The first line of defense during infection by a pathogen is the
           as genetically polymorphic. These reflect prior successful selection   triggering of innate immunity (Chapter 3). The infectious agent
           events. HLA polymorphisms provide a major evolutionary survival   and the foreign peptides generated from that agent then initiate
           benefit, since they equip the species with a large number of very   an immune response involving immune cells and signals that
           specific, but alternative, HLA molecules that differ in their binding   subsequently induce adaptive immunity.
           pockets, are most efficient in presenting different peptides, and   During  the course of an infection, specialized antigen-
           selecting different T-cell repertoires. A polymorphism that offers   presenting cells (APCs; DCs and macrophages) are activated to
           survival advantage would eventually increase in frequency. This   take up antigen. Increasing synthesis of class II coupled with
           illustrates  frequency-dependent selection, where the fitness of   presentation of and pathogen’s peptides by class II to the immune
           individuals bearing a particular allele increases, if they can manage   system of the host drives CD4 T cells that recognize the HLA
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