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CHAPtER 5  The Major Histocompatibility Complex                  87



               KEY CoNCEPtS                                       variants have been located within the noncoding regions of the
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            Human Leukocyte Antigen (HLA) in Infections,          genome.  It is therefore possible that disease association elements
                                                                  may not only lie within the HLA genes but also be dispersed
            Transplantation, Autoimmunity, and Cancer             within the rest of the MHC. One possible genomic element that
            •  HLA and infections by pathogens is an interplay of balancing acts,   can be located within the noncoding regions of the MHC and
              whereby the pathogens try to avoid the immune response and HLA   yet have a significant regulatory role is microRNA (miRNA). A
              alleles adapt to secure a robust immune response.   search for functional genomic elements within the noncoding
            •  Transplantation is an artificial system, and the transplant is perceived   regions  of  the  MHC  genes revealed 12  miRNAs, including
              by the immune response to be a foreign element.     hsa-miR-6891 (miR-6891), which is encoded by intron 4 of
              •  Induction of tolerance is the objective.         HLA-B.  Thus some, and perhaps many, diseases associated with
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              •  For the host to tolerate the graft, physicians attempt to engender
                immune nonresponsiveness to the transplant by manipulating the   specific MHC elements, whether HLA alleles or not, may involve
                immune response pharmacologically.                noncoding RNAs (miRNAs or long noncoding RNAs) with
              •  The presence of donor-specific antibodies is a major problem in   important biological functions of a regulatory nature.
                the field of transplantation because these antibodies are primarily   Below is a compilation of selected diseases with strong
                responsible for chronic rejection reactions we observe.  HLA allele associations in different populations. A more extensive
            •  There are three features of the adaptive immune system that can set   list of diseases and reference materials can be found in
              the stage for pathogenic autoimmunity.              other works. 25-27
              •  First, the individual’s adaptive immune system is determined by
                the set of self peptides and self HLA molecules that select the   Ankylosing Spondylitis
                T-cell receptor (TCR) repertoire.
              •  Second, the drive to genetic polymorphism that generates many   One of the more extraordinary observations in the MHC field
                different alternative forms of peptide-binding HLA molecules influ-  was made in 1973 when the frequency of HLA specificity HLA-B27
                ences patterns of self and nonself reactivity.    was found to be 95% in those with the disease ankylosing
              •  Third, certain HLA allotypes bind particular self peptides from critical   spondylitis (AS) (Chapter 57). This impressive observation
                target antigenic molecules that can predispose to autoimmune
                responses and disease.                            implicated HLA-B*27 in the pathogenesis of AS and propelled
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            •  Oncogenesis is associated with the modification of patterns of antigen   the field of HLA and disease associations.  Different B27 alleles
              presentation by the cancerous cells to immune cells and by modification   have different strengths of association with the disease, making
              of immune cell responses to the cancerous cells.    genetic testing useful over and above serological testing. Even
              •  This enables the cancer to avoid immune surveillance and detection   though the association of  AS to B27 is among the strongest
                by the immune response.                           genetic associations with a common disease, the mechanism of
                                                                  action remains uncertain. AS has been hypothesized to be triggered
                                                                  by exposure to a common environmental pathogen. HLA-B*27:02
                                                                  and B*27:05 demonstrate the highest degree of association. AS
           HFE, which is in LD with  HLA-A; and congenital adrenal   is characterized by arthritis affecting the spine and the pelvis.
           hyperplasia resulting from an allele of the gene CYP 21B, which   Twin studies have confirmed that susceptibility to AS is genetically
           causes 21-hydroxylase deficiency and is located within the class   determined. Family studies suggest that  <50% of the overall
           III region of the MHC and thus in LD with HLA-B.       genetic risk is caused by HLA-B27. HLA-B27 is found in 8–10%
             A second category implicates antigen presentation by the     of the population, with only a minority of carriers progressing
           HLA allele. This category deals with diseases that have a strong   to development of the disease. It is likely that other genes, both
           immunological component. It has been hypothesized that inap-  within and outside the MHC, are involved. A number of GWAS
           propriate immune reactivity to some self antigens can reflect   have demonstrated that non-HLA genes are also associated with
           aberrant T-cell repertoire selection, immune cross-reactivity with   AS. These include the interleukin-23 receptor (IL-23R) and the
           foreign antigens, immune attack of “altered self” antigens, or   protein-cleaving enzyme ER aminopeptidase 1 (ERAP1).
           differences in the expression levels of certain HLA alleles that   B27 testing can be an instructive component of the diagnostic
           secondarily influence the course of infections or cancer. The   work up of AS. Because of the chronic nature of the disease and
           MHC cusp theory represents another hypothesis. In this case,   its gradual debilitating nature, the value of B27 testing is that a
           the MHC codes for allele-specific ligands in the cusp region of   presumptive diagnosis allows institution of treatment early in
           the molecule, which interact with non-MHC receptors and activate   the disease when patients may have minimal symptoms.
           various  pathways. Aberrations  in  these  pathways  could  cause
           MHC-associated diseases. According to this hypothesis, the cusp   Narcolepsy
           region has a peculiar three-dimensional shape that has been   Narcolepsy is a long-term neurological disorder characterized
           preserved on both class I and class II molecules through evolution,   by irresistible daytime sleep attacks. People with narcolepsy suffer
           not dependent on antigen presentation, and is a hub for signal   from episodes in which they fall asleep unexpectedly during the
           transduction ligands that interact with a variety of receptors   day. These “sleep attacks” can occur at any time and during any
           and activate important biological functions. The MHC cusp   activity. Narcolepsy affects approximately 1 in 2000 people. Often
           theory posits that HLA molecules promote disease because of   those affected have low levels of the neurotransmitter hypocretin
           their auxiliary allele-specific, yet antigen presentation–independent,   (also known as orexin). Hypocretin is a neuropeptide hormone
           biological effect. 22                                  that is responsible for controlling appetite and sleep patterns.
             Although many of these associations lie within the highly   Even though the cause of narcolepsy is unknown, the disease is
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           polymorphic  HLA  genes,   GWAS  using  SNP  markers  have   believed to be of autoimmune nature.
           established that not only HLA genes but also the MHC region   Family studies have shown that genetic heritability plays a
           as a whole harbors many SNPs associated with a large number   role in narcolepsy. However, twin studies show that only 25–30%
           of traits or diseases. Indeed, up to 90% of autoimmune disease   of twins are concordant for the disease, again implicating
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