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88           PARt oNE  Principles of Immune Response


        environmental or other epigenetic events. The HLA-DQB1*06:02   disease, underlying both genetic heritability, but also other
        allele on the DRB1*15:01–DQA1*01:02–DQB1*06:02 haplotype   factors, such as environmental triggers or epigenetic components.
        has been shown to be one of the most important predisposing   Multiple genetic loci have been shown to contribute to the risk
        genetic factors, with 85–95% of patients with narcolepsy carrying   of developing RA. Of these, the HLA class II DRB1 is the most
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        this haplotype.  Conversely DQB1*05:01 and DQB1*06:01 have   important and contributes 30–50% of the overall genetic sus-
        a protective effect. The protective associations of these two DQB1   ceptibility risk.
        alleles with narcolepsy may provide an insight to the molecular   The HLA DRB1 alleles associated with RA share common
        mechanisms for the differential associations of DQB1*06:01 and   sequences at positions 70–74 of the β chain. 31,32  This has led to
        DQB1*06:02, as the size of P4 pocket of DQB1*06:02 is larger   the shared epitope hypothesis. Amino acids in these positions
        than the DQB1*06:01. This difference possibly influences the   influence both peptide binding and contact between the HLA
        binding of larger residues in the DQB1*06:02 allele, which may   and the TCR. HLA-DRB1 alleles associated with RA have any
        explain the opposite effect these two alleles have on narcolepsy.   of the following sequences: QKRAA, QRRAA, RKRAA, and
        Homozygosity for HLA-DQB1*06:02 increases the risk for   RRRAA. In Fig. 5.4, the yellow-colored residue in the α-helical
        narcolepsy compared with heterozygosity, as does heterozygosity   ribbon is glutamine, and the magenta residue is positively charged
        for HLA-DQB1*03:01/DQB1*06:02.                         lysine. Hydrogen bonding to two side chains of the peptide is
           HLA testing for DQB1*06:02 in narcolepsy is a useful aid to   shown. The region around position 70 is involved in the formation
        diagnosis. However, as instructive as the association may be, it   of a peptide side chain–binding pocket that binds the fourth
        is not specific as there are many patients with narcolepsy without   amino acid side chain contained within the HLA molecule. The
        HLA-DQB1*06:02 and many individuals with HLA-DQB1*06:02   presence of a negatively charged residue at position 71 or 74
        who do not have narcolepsy.                            removes susceptibility for RA. The presence of two alleles of this
                                                               group increases susceptibility and favors development of more
        Type 1 Diabetes                                        severe disease. 33
        Type 1 diabetes (T1D) is also known as insulin-dependent diabetes   In addition to the MHC, GWAS have led to the identification
        mellitus (IDDM; Chapter 71). This is a disease in which the body   of over 100 loci associated with RA. Among these is the protein
        fails to maintain normal glucose levels because of the destruction   tyrosine phosphatase, nonreceptor type-22 (PTPN22) gene, which
        of insulin-producing pancreatic islet cells. The disease is character-  codes for an inhibitor of T-cell activation. The majority of these
        ized by infiltration of immune cells (CD4 and CD8 T cells) into   additional loci are expression quantitative trait loci (eQTLs), in
        the islets of the pancreas and by autoantibody production. When   which genetic variants regulate the level of transcription.
        >90% of an individual’s β cells are destroyed, clinical symptoms
        ensue.                                                 Multiple Sclerosis
           Twin studies have shown that the concordance rate for the   Multiple sclerosis (MS) is a complex neurodegenerative disease
        disease is 30–50%. This suggests that other factors, including   in which myelin sheath degradation is caused by the immune
        environmental triggers (e.g., diet and viral infections) and epi-  system (Chapter 66). On the basis of family and twin studies,
        genetic changes, may be involved. The major heritable risk of T1D   the disease has been shown to have a large genetic component.
        comes from the HLA system (about 50%). More than 90% of   HLA-DRB1*15:01, DQA1*01:02, DQB1*06:02 is a disease sus-
        Caucasian patients with T1D carry the haplotypes DRB1*03:01,   ceptibility haplotype and accounts for up to 35% of the risk for
        DQA1*05:01, DQB1*02:01 or DRB1*04:01, DQA1*03:01,      developing the disease. The primary association is with the DRB1
        DQB1*03:02. Patients heterozygous for these haplotypes carry     locus, and homozygosity is associated with increased risk.  A
        a greater susceptibility risk. The critical residues are thought to   number of GWAS have identified more than 100 additional
        be position 52 on the DQα chain and position 57 on the DQβ   candidate genomic regions conferring risk, including cell adhesion,
        chain. The presence of arginine of 52 at DQα and the absence of   leukocyte activation, apoptosis, Janus kinase (JAK)–signal
        aspartate at DQβ are strongly associated with T1D. Conversely,   transducer and activator of transcription (STAT) signaling, nuclear
                                                                                                                 34
        in Caucasian populations, resistance to T1D is conferred by   factor (NF)-κB activation, and T-cell activation and proliferation.
        DQA1*01:02, DQB1*06:02. Besides the contribution of the HLA,   The exact mechanism by which HLA genes increase susceptibility
        GWAS have identified a number of other genomic regions associ-  to MS is as yet unknown. Although HLA typing is not of any
        ated with the development of T1D. 30                   diagnostic value for MS, genetic testing is still of value in providing
           HLA typing is useful as an aid to diagnosis of T1D. Considering   insights into the mechanism of the disease.
        that the islet destruction by the autoimmune processes is progres-
        sive, associated with the presence of autoantibodies, HLA typing   Celiac Disease
        of siblings of patients with T1D may be useful information in   Celiac  disease (CD)  is an autoimmune disorder of  the small
        assessing risk for the nonsymptomatic siblings.        intestine caused by a combination of genetic and environmental
                                                               factors (Chapter 75). The disease is characterized by diarrhea
        Rheumatoid Arthritis                                   and weight loss, among other symptoms. The strong genetic
        Rheumatoid arthritis (RA) is a chronic disease characterized by   component has been confirmed with monozygotic twins dem-
                                                                                        35
        inflammation of the synovial lined joints leading to joint defor-  onstrating 90% concordance.   A significant portion of the
        mation and disabilities (Chapter 52). The presence of autoan-  genetic predisposition (about 40% of genetic risk) comes
        tibodies, such as rheumatoid factor and anticitrullinated protein   from HLA genes. GWAS also implicate additional genomic
        antibodies (ACPAs), are largely responsible for the classification   regions. The disease-triggering environmental factor comes from
        of RA as an autoimmune disease. It is a multifactorial disease   a  component  of  wheat  gluten,  the  protein  gliadin  (family  of
        that involves both environmental and genetic factors. RA in the   closely related proline- and glutamine-rich proteins). CD is a
        general population has a prevalence of  <1%. Studies with   lifelong condition, with the only effective treatment being a
        monozygotic twins show a 12–15% concordance rate for the   gluten-free diet.
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