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                                         Overview of T-Cell Recognition: Making

                                      Pathogens Visible to the Immune System



                                                                                                     Andrea J. Sant







           ANTIGENS                                               of reactivity to self proteins, leaving cells with the potential to
                                                                  respond to a diverse set of antigens that may be expressed on
           Antibodies and T-Cell Receptors Recognize Antigens     pathogens or other “foreign”molecules.
           By the late nineteenth century, “antibodies” were the hypothesized   Antigens can belong to many different chemical classes and
           to be molecular entities that mediated specific immune memory   can derive from viral or bacterial proteins, lipids, carbohydrates,
           and could neutralize toxins and whose presence resulted in the   or combinations of these, such as lipoproteins or glycoproteins.
           formation of precipitates when mixed with the molecular species   Antigens can also be small chemical compounds, termed haptens
           that induced their formation. In almost all cases, evidence for   (Fig. 6.2), made synthetically in the laboratory, such as nitrophenyl
           the presence of such antibodies required the prior exposure of   (NP), or be a natural compound introduced into the host, such
           responding animals to the very substances (or ones closely related,   as urushiol, the toxin found in poison ivy, which becomes modified
           as in the case of toxoids) with which the antibodies reacted. This   and antigenic when introduced into the host (Fig. 6.3). Haptens
           specific relationship of inducing agent and antibody led to the   generally require linkage to a larger host protein or foreign protein
           concept of an antigen—the molecular entity that could induce   to become immunogenic.
           the formation of antibodies specific for it and that could be
           recovered in the blood of exposed animals. By developing the   Innate Receptors Recognize Pathogen-Associated
           concept of the specific receptor, with a specificity analogous to   Molecular Patterns or Danger Signal Ligands
           the lock-and-key model of enzymes, Paul Ehrlich could explain   As a result of advances in the domain of innate immunity, it has
           the specificity of antibodies in molecular terms of a reciprocal   become challenging, but all the more important, to distinguish
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           interaction between a receptor and its binding partner (ligand).    between antigens and the many ligands for innate immune
           Thus an “antigen” is any molecule that, in whole or in part, binds   receptors (Chapter 3). Innate receptor ligands are often described
           specifically to the antigen-binding domain of an “antigen receptor”   as exhibiting patterns or motifs characteristic of a microbial
           (antibody or T-cell receptor [TCR]) (Fig. 6.1).        class or physiological condition and the host proteins that rec-
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             Ehrlich proposed several tantalizing, but unsatisfying, explana-  ognize them as “pattern recognition receptors.”  Many of these
           tions for the other critical property of antigens—that they induce   innate ligands facilitate the host immune system’s recognition
           the formation of their own antibodies. This view of antigen is   of a pathogen. Included in these innate ligands are Toll-like
           that of the vaccinologist, who wants to induce effective immunity   receptors (TLRs), which recognize such ligands as bacterial
           to an organism expressing that antigen, or of a clinician, who   lipopolysaccharide (endotoxin), or viral single- or double-stranded
           is wondering why a patient does or does not respond to a   RNA. Included among the innate activators are cytosolic DNA
           particular allergen, self antigen, or tumor antigen. More than a   sensors and nucleotide-binding oligomerization domain (NOD)–
           century later, the explanation for the antigenicity of antigens   like receptors (NLRs), which recognize bacterial wall peptido-
           remains an important and poorly understood issue—why humans   glycans and intracellular metabolites induced by cellular damage.
           fail to respond adequately to some pathogen or tumor antigens   The conceptual difference between antigens and innate receptor
           and how vaccines can be improved; why humans respond to   ligands lies in the diversity of ligands and the receptors that can
           their  own  self antigens  (autoantigens) or  antigens  present  in   engage them. The innate immune response recognizes predictable
           tissue grafts (alloantigens); and how autoimmune and tissue   ligands through binding of a limited set of receptors that recognize
           graft-related diseases (graft-versus-host disease [GvHD] and graft   these pathogen-derived molecules. The result of this recognition
           rejection) can be prevented or treated. The cellular mechanisms   is often a rapid production of cytokines or induction of cell-
           governing how and when humans respond to antigens remains   surface proteins, including host human leukocyte antigen (HLA)
           at the cutting edges of both laboratory science and clinical   proteins and costimulatory proteins that help activate the adaptive
           medicine and are discussed later in this chapter. At the core of   immune system. In contrast, the adaptive immune response
           this central issue is the defining feature of the immune system—  collectively recognizes a wide variety of antigens through a
           the distinction between “self” and “nonself.” The host must remain   tremendously diverse, but clonally distributed, set of BCRs and
           tolerant to its own macromolecules and yet have the capacity   TCRs. The function of the specific antigen receptors in the
           to respond to its nonself. The molecular components of the   adaptive immune responses and the cells that bear them is to
           immune system, including cells that display TCRs (T cells) and   promote activation and proliferation of the antigen-specific cells,
           B-cell receptors (BCRs; antibodies expressed by B cells), undergo   leaving the host with memory B cells or T cells that are in higher
           developmental events that promote self-tolerance—elimination   abundance and often in a poised state after the first encounter.

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