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CHaPTEr 96  Molecular Methods           1310.e1


              MU l TIP l E-CHOICE QUESTIONS

           1.  Population screening  for carrier status in genes that      B. Array comparative genomic hybridization (aCGH)
             cause  primary immunodeficiencies  (PIDs)  is made  more      C. Sanger sequencing of the TBX1 gene
             difficult by:                                           D. Next-generation sequencing whole exome sequencing
              A. The prominent role of triplet repeat expansions among   3.  Next-generation sequencing (NGS) diagnostics used many
               causative mutations                                  bioinformatics methods, including:
              B. Most primary immune deficiencies being inherited as    A. Base calling from raw instrument data (primary analysis)
               autosomal dominant traits                             B. Demultiplexing, alignment to the reference genome, and
              C. A large number of different genes (locus heterogeneity) and   variant calling (secondary analysis)
               many very rare pathogenic variants (allelic heterogeneity)   C. Annotation of variants for their predicted effect on proteins
              D. Most carriers coming from populations with a history of   and splicing
               consanguinity
                                                                     D. Classification of variants for their likely role in causing
           2.  In the workup of a newborn with congenital heart disease,   disease
             hypocalcemia, and absent thymus, the optimal testing     E.  All of the above
             approach is:
              A. Fluorescent  in situ hybridization (FISH) for 22q11
               microdeletions
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