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 mebooksfree.com  mebooksfree.com   c-III  N mebooksfree.com        RM  O R  P R mebooksfree.com            mebooksfree.com                mebooksfree.com
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                       PART III  Basic Virology
                 242
                                                                                             DNA replication and
                          Integration
                                                           c-I
                                                    O
                                                P
                                                                                       c-II
                                                                                cro
                                                                   P
                            genes
                                                                                             capsid protein genes
                                                     L
                                                 L
                 FIGURE 29–9
                                Control of lysogeny. Shortly after infection, transcription of the N and cro genes begins. The N protein is an antiterminator
                 that allows transcription of c-II and c-III and the genes to the right of c-II and to the left of c-III. The c-II protein enhances the production of the
                 c-I repressor protein. c-I has two important functions: (1) It inhibits transcription at P R O R  and P L O L , thereby preventing phage replication, and
                 (2) It is a positive regulator of its own synthesis by binding to P RM . The crucial decision point in lysogeny is the binding of either c-I repressor or
                 the cro protein to the O R  site. If c-I repressor occupies O R , lysogeny ensues; if cro protein occupies O R , viral replication occurs. N, antiterminator
                 gene; c-I, repressor gene; c-II and c-III, genes that influence the production of c-I; P L O L , left promoter and operator; P R O R , right promoter and
                 operator; P RM , promoter for repressor maintenance; cro, gene that antagonizes the c-I repressor.
                                                                                                            mebooksfree.com
 mebooksfree.com  mebooksfree.com           mebooksfree.com            genome is the mRNA). Other viruses, such as influenza virus,        mebooksfree.com
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                   PEARLS
                   Viral Growth Curve
                                                                       have a negative-polarity RNA genome and have an RNA poly-
                   •  One virion infects a cell and hundreds of progeny virions are
                    produced within hours. This is a remarkable amplification and
                                                                       has a double-stranded RNA genome and has an RNA poly-
                    explains the rapid spread of virus from cell to cell.
                                                                       merase in the virion that synthesizes the viral mRNA. Retrovi-
                   •  The  eclipse period  is  the  time  when  no  virus  particles  are   merase in the virion that synthesizes the viral mRNA. Rotavirus
                                                                       ruses, such as HIV, have a positive-polarity RNA genome and
                    detected within the infected cell. It occurs soon after the cell is
 mebooksfree.com  mebooksfree.com           mebooksfree.com          •  DNA viruses: Most DNA viruses, such as herpesviruses, adeno-       mebooksfree.com
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                                                                       have a DNA polymerase in the virion that synthesizes a DNA
                    infected.
                                                                       copy of the RNA genome. This DNA is the template used by the
                   •  Cytopathic effect (CPE) is the term used to describe the dam-
                                                                       host cell RNA polymerase to synthesize the viral mRNA.
                    age, both morphologic and functional, inflicted on the cell by
                    the virus. In the clinical laboratory, the presence of a virus in the
                                                                       viruses, and papillomaviruses, have a double-stranded DNA
                    patient’s specimen is often detected by seeing a CPE in cell
                                                                       genome and use the host cell RNA polymerase to synthesize
                    culture.
                                                                       the viral mRNA. Poxviruses have a double-stranded DNA
                                                                       genome but have an RNA polymerase in the virion that syn-
                   Viral Growth Cycle
                                                                       thesizes the viral mRNA. Poxviruses have an RNA polymerase
                   •  Attachment: The interaction of proteins on the surface of the
                                                                       in the virion because they replicate in the cytoplasm and
                    virus with specific receptor proteins on the surface of the cell is
                                                                       do  not  have access to the host cell RNA polymerase in the
                    one of the main determinants of both the species specificity
                                                                       nucleus.
                    and the organ specificity of the virus.          •  Viral replication: All DNA viruses replicate in the nucleus,
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 mebooksfree.com  mebooksfree.com           mebooksfree.com          •  Viral genome: The genome of all DNA viruses is double-stranded     mebooksfree.com
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                   •  Infectious nucleic acid is viral genome DNA or RNA, purified
                                                                       except poxviruses, which replicate in the cytoplasm. All RNA
                                                                       viruses replicate in the cytoplasm, except retroviruses, influ-
                    free of all proteins, that can undergo the entire replicative cycle
                                                                       enza virus, and hepatitis D virus, which require an intranuclear
                    within a cell and produce infectious progeny viruses. Infectious
                    nucleic acid, because it has no associated protein, can enter
                                                                       step in their replication. Many viruses encode a replicase, which
                                                                       is a DNA or RNA polymerase that synthesizes the many copies
                    and replicate within cells that the intact virion cannot.
                                                                       of the progeny viral genomes.
                   •  Polarity of viral genome RNA: Genome RNA that has the
                    same base sequence as the mRNA is, by definition, positive-
                    polarity RNA. Most positive-polarity genomes are translated
                                                                       except  for that of  parvoviruses, which  is single-stranded.  The
                    into viral proteins without the need for a polymerase in the
                                                                       genome of all RNA viruses is single-stranded except for that of
                    virion.  The exception is the retroviruses, which use reverse
                                                                       reoviruses (e.g., rotavirus), which is double-stranded.
                    transcriptase in the virion to transcribe the genome RNA into
                    DNA. Genome RNA that has a base sequence complementary
                                                                       synthesis of viral nucleic acids, whereas late proteins are typi-
                    to mRNA has, by definition, negative polarity. A virus with a   •  Viral proteins: Early proteins are typically enzymes used in the
                                                                       cally structural proteins of the progeny viruses. Some viruses,
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 mebooksfree.com  mebooksfree.com           mebooksfree.com          •  Assembly and release: All enveloped viruses acquire their          mebooksfree.com
                    negative-polarity RNA genome must have an RNA polymerase
                                                                       such as poliovirus and retroviruses, translate their mRNA into
                    in the virion to synthesize its mRNA.
                                                                       precursor polyproteins, which must be cleaved by proteases to
                   •  Viral gene expression: All viruses require virus-specific mes-
                                                                       produce functional proteins.
                    senger RNA to synthesize virus-specific proteins.
                   •  RNA viruses:  Some  RNA  viruses,  such  as  poliovirus,  have  a
                                                                       envelope by budding through the external cell membrane as
                                                                       they exit the cell, except herpesviruses, which acquire their
                    positive-polarity RNA genome that serves as the mRNA (i.e., the
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