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BIOCHEmISTRY  ``BIOCHEMISTRY—MOlECUlAR               BIOCHEmISTRY  ``BIOCHEMISTRY—MOlECUlAR           SECTION II         41




                  Functional                       Enhancer/
                  organization of a                 silencer   Promoter  5´ UTR      Open reading frame       3´ UTR  Silencer
                  eukaryotic gene                                           Exon    Intron Exon  Intron  Exon

                                         DNA      5´        CAAT  TATAAT           GT  AG   GT  AG           AATAAA      3´
                                                                         ATG start codon             Stop
                                                           CAAT Box  TATA Box
                                                                   Transcription start                 Polyadenylation signal
                                       Transcription
                                                                            Exon    Intron Exon  Intron   Exon
                                     2  Pre-mRNA                      2            GU  AG   GU  AG

                                        Splicing
                                                                                     Protein coding region
                                     3  Mature                             3                             AAAAAA
                                         mRNA
                                                                             5´ cap
                                                                                                        Poly-A tail
                                       Translation
                                     4  Protein                                         4




                  Regulation of gene expression
                   Promoter              Site where RNA polymerase II and multiple   Promoter mutation commonly results in
                                          other transcription factors bind to DNA   dramatic  in level of gene transcription.
                                          upstream from gene locus (AT-rich upstream
                                          sequence with TATA and CAAT boxes).
                   Enhancer              DNA locus where regulatory proteins      Enhancers and silencers may be located close to,
                                          (“activators”) bind, increasing expression of a   far from, or even within (in an intron) the gene
                                          gene on the same chromosome.             whose expression they regulate.
                   Silencer              DNA locus where regulatory proteins
                                          (“repressors”) bind, decreasing expression of a
                                          gene on the same chromosome.



                  RNA processing         Initial transcript is called heterogeneous nuclear  mRNA is transported out of nucleus to be
                  (eukaryotes)            RNA (hnRNA). hnRNA is then modified and   translated in cytosol.
                                          becomes mRNA.                           mRNA quality control occurs at cytoplasmic
                                         The following processes occur in the nucleus:  processing bodies (P-bodies), which contain
                      Cap     Coding         ƒ Capping of 5′ end (addition of      exonucleases, decapping enzymes, and
                   5'
                     G ppp                  7-methylguanosine cap)                 microRNAs; mRNAs may be degraded or
                   3'                        ƒ Polyadenylation of 3′ end (≈ 200 As)  stored in P-bodies for future translation.
                     HO-AAAAA                ƒ Splicing out of introns            Poly-A polymerase does not require a template.
                        Tail
                                         Capped, tailed, and spliced transcript is called   AAUAAA = polyadenylation signal.
                                          mRNA.






















          FAS1_2019_01-Biochem.indd   41                                                                                11/7/19   3:16 PM
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